| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_30358 |
|---|
| Symbol | |
|---|
| ID | 4837498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | + |
|---|
| Start bp | 2613651 |
|---|
| End bp | 2616311 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640388813 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382732 |
|---|
| Protein GI | 150864049 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.125724 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACAA GAGGTAAAAT TGCGGCATTT CCTGATGGGA ACTCGTTTGT AGCATATAAC
GACTCTGTGG ATAATTTAGT TATTGGAAAC AGTGAAGGTT TAGTAAAGGT ATTCAACATT
CATGAGCCCG ATTTGGAACC AACCTCGATT GATATCTTGG AAAATTTGAC TTCGTTATCC
AACCACGGTG CAAAATTGTT AATCACGACC ACAGGAGGCG AGCTTGAGCT AATAGACTTG
AAATCACTGG AATCAAAAGG TTCAATTTAC AGATCTGGGT TACCTTTAAG AGACTCTTTG
TTCATCAATG AAGGTAAGAG AGTACTCTGT GGAGGAGACG ATAACAAGTT GGTAGTGATT
GACTTGGAAA ATGGAAACAA CACTTCTTCG GTATCTTTAT CAGATCAATT CTTGAGTGTA
GCCTATAACT ATACTGGTGA GCTCTTGGCT GTTGGTTTAT CTAGCGGTGA CGTTCAGTTG
TATTCTGTTA CCAATGAACA GCCAAATTTG ATTCACACCA TTCCAAATGT GTTAGTTTCC
AAAATTCATA CTTCCATGGA TAAAATTGAC TATAACGAAG AGCACGAGGA CGAATTGGTT
TCAACCAGAC CGCAATGGAC TTCGGATGGA AGATATCTCT TGGTTCCTAC TGCTGTGAAC
AAGATTCTGG TCTTCGACAG ATCAAACTGG GCTGAACCAA TTAAATCATT CGACTCTGAG
GCTAAGATCA TTGACTTCAG ATTATCACCA ACAAGTGACC ATCTAGCTGT CCTCGATTTT
GACGGTGTAG TGAGATTATT TGACTTTGAT AGCAAGAAAA CATTACGCGA AATAGAGCTT
GACTTGGATG GTAAGTTCCC TCTAAATCTT GCCTGGAAAG ATACTCAGTT GTTTGTAGGT
ACTACTGATG GTAGTATCTT GACATTTAAG GATGTTGTAG ACTCAGCAAC CACAAGAGAA
ATTAATAGGT TATTTATGGG AGAAGCTGAC GAGTCTGACG GTGAAGATAG CAACACCGAG
GAGCTTGGCC AAGACGAAGA AGAGAATGAA GAGGAAGCAC CTGATGTCAA GTCAGAACTT
TCCAAACCTG GCTACAGATT GCATGCTGAA GACTCTTTGG TTATCGACCA AGATGAGGAC
GACATGCCAG ACTACTCCAA CGATCGAAGA AAACGTCACA AGCCTAATGG ATACAGTGCA
CCTAGACAAA CTACTGCAAG ATCTTTTGGT ACAGTTATTG AAGGAGAGAT CAAGCCATAT
TCTCCAGGTT CCACTCCTTG GAATAGCGAA AATAAGGGCT CTGCTACTGT TGAGAGACGA
TACTTATCTA TGAACTCAAT TGGATATTCG TGGGTAGTGA AGAGCTCTAG TGGTACCGAC
GGTATGTCTC AGCAGACTGT CAGTGTAACA TTTTTTGACA GAGGCTTGCA TAAGGATTAC
CATTTTGTTG ATTACAACGG CTATGACTTG TGTTCTATCA ATGAAAAGGG TGCATTGTTT
GCCAGTTCAG GCTATTCAAG TAAATCAGCT CTTGACAATG GCAGAATATA TTATAGAAAA
CATGATTCTG AACAAGATGC TTGGGAAAGA CGGATTCCCT TGTTGAGAGG TGAATATATT
ACCTCTGTCT GTGTAACAAA TAGTCACTTG TTGGCCAACA TGTCTGACGA ATCCTACATC
ACAGTTGCAA CCAATTTCGG ATATGTTAGG TTCTACAATT TGCATGGTTT GTGCGTGAAC
TTACTCAAGA TGACTCCTGT TGTTACTATG ATTTCATCTT CTAATTCTGT TTTGTTCATT
ATTAATCAGG TCGCTGCCAA TCTTTATAGT TACTCGCTTG TTGATATGAA TCAAGACTAC
AAGTTTATTC AGCAGGATGT ATTACTTCCA TTAAAGAAGC ACGCCGATTC CCCGGACATT
CCATTGATCA AGGGTATCTT CTTCAACGAG TACAATGACC CATGTATAAT TCCAGGTATT
GATGATACTT TGTTAATCTT ACAGTCATGG AGAGAAGCAA ATAACGCCAG ATGGGTTCCG
ATATTAAACT GTCACAATGC TGTCACAGAC TACGGTAATG ATAATAGAAA AGGTTGGAAG
TGTTGGCCCT TGGGTGTTTA CGATGACCAG TTGAACTGTC TAATATTGAA GAACAATCAC
GAGCATCCTG GTTTTCCATT ACCAATTCCA ATTGTTCTCA ATATCGAATT GCCGATCTTG
ATTAAGGACA AGTCAAAGAA GAAAAAGAAC GACATTTTGG AGGAGGAGCT TGGCGACAGT
GATGCAGAGG AGCCTGAAGT CAAGCAGGAT GATCCTGAAG AGAATTTCTT GAGATCAAGG
ACATTTGGTA GTTTGGCCTT TGACTCACAC AACGATGATA ATACAGAAGA AACAGAAGAG
GGTCAGATAG AAGAAAGACT TAATGAGTAT ATGGCGTTGT TTGACAGGTC ATTGTTGAAG
CTATTTGGAG AGTCCTGTAA AGATCAGAGA TTGAACAAAG CCTTGAGCGT AGCCAAGTTG
ATGAAGACGG ACAAGGCATT GATGGCTGCA TCGAAGATCA GTGAAAGAAT GCAGTTCATG
AACTTGGCCA CAAAGATTGG TGAATTGAGA GAAAAGTTGC TCAACGAGGC AGAAGAAGTT
GACGAAGAGG AAGATGATTA A
|
|---|
| Protein sequence | MATRGKIAAF PDGNSFVAYN DSVDNLVIGN SEGLVKVFNI HEPDLEPTSI DILENLTSLS
NHGAKLLITT TGGELELIDL KSSESKGSIY RSGLPLRDSL FINEGKRVLC GGDDNKLVVI
DLENGNNTSS VSLSDQFLSV AYNYTGELLA VGLSSGDVQL YSVTNEQPNL IHTIPNVLVS
KIHTSMDKID YNEEHEDELV STRPQWTSDG RYLLVPTAVN KISVFDRSNW AEPIKSFDSE
AKIIDFRLSP TSDHLAVLDF DGVVRLFDFD SKKTLREIEL DLDGKFPLNL AWKDTQLFVG
TTDGSILTFK DVVDSATTRE INRLFMGEAD ESDGEDSNTE ELGQDEEENE EEAPDVKSEL
SKPGYRLHAE DSLVIDQDED DMPDYSNDRR KRHKPNGYSA PRQTTARSFG TVIEGEIKPY
SPGSTPWNSE NKGSATVERR YLSMNSIGYS WVVKSSSGTD GMSQQTVSVT FFDRGLHKDY
HFVDYNGYDL CSINEKGALF ASSGYSSKSA LDNGRIYYRK HDSEQDAWER RIPLLRGEYI
TSVCVTNSHL LANMSDESYI TVATNFGYVR FYNLHGLCVN LLKMTPVVTM ISSSNSVLFI
INQVAANLYS YSLVDMNQDY KFIQQDVLLP LKKHADSPDI PLIKGIFFNE YNDPCIIPGI
DDTLLILQSW REANNARWVP ILNCHNAVTD YGNDNRKGWK CWPLGVYDDQ LNCLILKNNH
EHPGFPLPIP IVLNIELPIL IKDKSKKKKN DILEEELGDS DAEEPEVKQD DPEENFLRSR
TFGSLAFDSH NDDNTEETEE GQIEERLNEY MALFDRSLLK LFGESCKDQR LNKALSVAKL
MKTDKALMAA SKISERMQFM NLATKIGELR EKLLNEAEEV DEEEDD
|
|---|
| |