Gene PICST_29838 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_29838 
Symbol 
ID4837128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009042 
Strand
Start bp1305243 
End bp1306259 
Gene Length1017 bp 
Protein Length338 aa 
Translation table12 
GC content41% 
IMG OID640388443 
Producthypothetical protein 
Protein accessionXP_001383018 
Protein GI150864267 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0241478 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGAAT GGGATGTTTC TGGGTCTCAC AAGCAAGAAC TACCAAATTA CAGTCAGGAT 
GATGAAATTA CCTTCCTGTC TGAAAAGATC GAAGAATCTC CTCCAGCCGA TGTGCCGACA
AACGTAGATG CCGGCAAAAG ATGGAGGTTC ATGTTATGTA ACAACTTCTT CAATTCTGAT
CTAAAGGTTT TTGTGTCGGC TAATTCTGTG GAGAAGTACA AATCATTCAA GAACTCTAGC
AGCGCACAAG CTGTTCAATA CGATCGCGAA TTGCAACTGC AAGGCATTGG CATTCCGTTG
ATAAGAGCAG ATGTTCACGA TTTCCATGCT CACAAATTCT TAACTATAAA ACGGTACTAT
GTAGATAAAG AAAAGATCGG GTCTCGAGGT TTTGATAGCA AGAAAGACTT GCATGACTTC
TGTATCGTAC GAAAACATCG ACATGGTTCA TATTCTACCT ATGAATTGAA GTTTTCTCCT
GATCCTAACG ACATAAGCCA GGACTTCACC ATTGTATTAT TTAAGCATGG TGTATTACCA
ATTGCGGATT ATGTGTACAG AGGTAGTCGA TACAGGTGGA TATACGAAAC AAGGTCGTAC
GAGTCTCCCT ATTGCTACTC CAATTACCTC TTGTCTCCGG GTCAGCATTC GATGACAGAT
AATTGGGACA AAGAAACAAA CAAGTTGGAG AAATCCCTTG ACCCTAATAA CCCCTTGATA
GGAGACTACA TGCTGAAAGC ATTCTCGTTA AAATCGCGTA ACACTAAGAA AGAGTACTAT
TCTCCAATGC AACTAGCATC GTTGGACGAA AACAAGAACT ACGACCCTTT TAGTCGCTTC
AGGCAAAAAG CTGTGTTCAC CATGAGAGAC ATGAACAATA CGTCCGACCA TCCCACGGTT
GACCATGAAA GTATATATTC TGTGAATTTG GATGCTCTCA CCAGTCTCTG CATAGCGTTA
GTATTCAAAC GTCGTGAAGA TATCAAAGAA GAAGCGAGGA AGATATTAGA AAACTAG
 
Protein sequence
MSEWDVSGSH KQELPNYSQD DEITFSSEKI EESPPADVPT NVDAGKRWRF MLCNNFFNSD 
LKVFVSANSV EKYKSFKNSS SAQAVQYDRE LQSQGIGIPL IRADVHDFHA HKFLTIKRYY
VDKEKIGSRG FDSKKDLHDF CIVRKHRHGS YSTYELKFSP DPNDISQDFT IVLFKHGVLP
IADYVYRGSR YRWIYETRSY ESPYCYSNYL LSPGQHSMTD NWDKETNKLE KSLDPNNPLI
GDYMSKAFSL KSRNTKKEYY SPMQLASLDE NKNYDPFSRF RQKAVFTMRD MNNTSDHPTV
DHESIYSVNL DALTSLCIAL VFKRREDIKE EARKILEN