| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_29666 |
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| Symbol | RDH1 |
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| ID | 4837234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009042 |
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| Strand | - |
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| Start bp | 816664 |
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| End bp | 817680 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 12 |
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| GC content | 44% |
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| IMG OID | 640388549 |
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| Product | short-chain alcohol dehydrogenase |
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| Protein accession | XP_001382930 |
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| Protein GI | 126132810 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.62197 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACCG CACCACCAAA TATACCATTT CCAGGTCTTC TCGGATGGAA GGCAATGATC
AATGGGTATT TTCCCTCAAA TCCTTCCTAC ACCGAAGAGC AATACCCTAA ACTCGACGGG
AAGGTTGTAA TTGTCACCGG TGGAAATACC GGTGTTGGTT ATCAAACTGC TAAATCTTTA
GCTGGGTCTA CCAATGCTAA GGTCTACATA TTTGCCAGAA GTGAGGAAAA GGCATTGGCT
GCAATCAGGA GAATGGAACT TGAAGTTGCT CAGGAGTACA ACAAAAGTAG TATTAATGTT
CACTTCATCA AACTTGACTT GGGTGATTTG ACCACGATCA AAGCTTCTGC TGACGAATTC
CTCTCCAAGG AAAATAGATT GGACATTGTA ATTCACAATG CTGGTGTCAT GGGCACTTCA
GTAGGTTCTA AGACAGTTCA GGGGGTTGAA TTACAGTTGG GTACAAACTG CTTTGGACCA
CACTTGTTGC AGAAGTATTT CGATCCACTT GTCATCGAAA CTTCGAAGAC CAACAAACCA
TACGAGTCTC GTATAGTGTG GGTGGCGTCT TCGGCACACT TCCAGTCTCC AGAAAGAGGA
ATTCACTACG CTGACCCAAA CTTTGTGGAC ACTCCACACT TACCAAGAGT ACTCTACTGC
CAAAGTAAAG CGGTCAACAT CATGCAAGCC ATTGCATGGC CCAAGAATCA TCCTGGTGCG
GATAGAGTGT TGTCCGTTTC CTTGTGCCCA GGCTTCCTCA ACACTGATAT TCAACGACAT
GCTAGTGGTA TTTGGAAATG GTTCATACCC TGGGTCCTTC ATGATCCCAG ATATGGTGCA
TACACCGAAT TATATGCTGC ATTGAACCCT GAGTTGAAAA ACCAAGGTGA ATACTATCAA
TCCTTCGGTA GATTAGGTGA TATCAGACCA GATATCAAGC TCGAGGAAAA TGTAGATAAA
GCTTGGGCAT ACTGTGAAGA GCAGGTGAAG GCATACTACA AAACAGTTAT AAAATAG
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| Protein sequence | MSTAPPNIPF PGLLGWKAMI NGYFPSNPSY TEEQYPKLDG KVVIVTGGNT GVGYQTAKSL
AGSTNAKVYI FARSEEKALA AIRRMELEVA QEYNKSSINV HFIKLDLGDL TTIKASADEF
LSKENRLDIV IHNAGVMGTS VGSKTVQGVE LQLGTNCFGP HLLQKYFDPL VIETSKTNKP
YESRIVWVAS SAHFQSPERG IHYADPNFVD TPHLPRVLYC QSKAVNIMQA IAWPKNHPGA
DRVLSVSLCP GFLNTDIQRH ASGIWKWFIP WVLHDPRYGA YTELYAALNP ELKNQGEYYQ
SFGRLGDIRP DIKLEENVDK AWAYCEEQVK AYYKTVIK
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