Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_28802 |
Symbol | SGE1.4 |
ID | 4851551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | + |
Start bp | 2113737 |
End bp | 2115434 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | |
GC content | 41% |
IMG OID | 640393259 |
Product | MFS efflux transporter |
Protein accession | XP_001387647 |
Protein GI | 126274828 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.211393 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.613875 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCCAA GCAACAAGAA AGAGAAAGAC CAAGTGCATA TAGTAGAGAA AGTCAAGCGT CCTCATAGAG ATCTGGACCT TTCTGATCAG CTAGGTGACG CTCACTTCAA TATTCTTCCA CAAAGGAGAA TTATTACTAT CTTGTTGATA CTTGCATTGG CCAATCTCGT TTCATTTGCA GATCAAACTG GTATAACAGT AGGCTTGTCT GCTATCGCTT CAGATTTGAA TTCAGAAAAG ACTATCAATT GGGCTGGTAC AGCTTCCTTG TTAGCAAATT GTGTTTGCCA AATTTTGTTC GGACGTCTCT CTGACATATT TGGAAGGAAG AATGTGTTGA TGTGGTGTTT AGCCATCTTA ATCATTGGAC AGGTTGCATG TTCAACAGCT CGAAATGGTC CTGAGTTCTA TGTATTTAGA GCATTAGCCG GGATTGGTAA TGGCGGTGTC TCTTCTCTTG GAATGGTTAT TTTAAGTGAT ATTGTCTCTT TGAAAGATAG AGGTAAATAC CAAGGTATAC TTGGTGCCAG TGTTGGATTA GGAAATATTG TTGGACCTTT CGTCATGTCT GCATTCGTAA AGCACTATTC CTGGAGGGGC TTCTATTATT TATTTGCACC CTTAGGCTGC CTTGTTAATG TTGCAATTTA TTTTACCATT GATGGAAATA CTAAACTTGA CGGTGTCTTG TCTAAGAAAG AAAAGTTCAA GAAGATAGAT TATTTGGGCA TTATAATTGC TTCGATTGCC TTAACTTGCC TTCTTGTTGC AATCAGTGGT AGTGGTACTT CATTTCCTTG GGATAGTAAG CTCACTATTA CCTTGTTTTG TGTTGGTGGT ATTGCATTCA TTGTATTCTT CTTAGTTGAG TGGAAGATTC CGGAGTTGCC AATGATCCCA TTAAGACTAT TCAAGAGCCC TTCTATGTGC TTGTTGTTTG CTTCCACTTT TTTGTTCGGC GCTACATACT TCAGTTTGTT GTATTACTTA CCATACTATT TCCAGATTGT CAGGTCTAAA AGCGAAATAC AAACTTCGGT ATTTATTGTT CCTTTGGTGG CTGCCCAAGC CCTTATGTCT ATTGTTGGAG GGCAAATCAT CACTCTTACA GGACATTATT TTTTTGTTGT ATGTGGAGGT TACGCACTTT GGTTAACTGG TTGTGGCTTA TTGATCATCT GGAATGAGCA CACGAGTGAT GGAGTTCTAG TTGTGGTAAT GTTGATCATT GGCACTGGTG TTGGTTTTTC ATTTCAACCT TCAATGGTAG CCATCCAAGC CAATTGTAAG AAGGCTGAAA GGGCGGTGGC AATCTCTACC AGAAATGTTT TGCGTTCCTT TGGGGGTGCC ATTGGTATTG CATCCGGATC TACTATGATT AGTAACACGT TATTGAACCA TCTCGCACAA ATTCAAGGTC AATCAGACTT AACTGAGGCT ACGATCGACT ACTTGAAGGA CCATATATAT TCGAAGATAA ACCTTGCTGG GGTTTCGGCA TCCGAGATTA CGACAATTTC ACAATTGTAC ATCTCGGCAT TGAGATACTA CTACTATCTC ATCGTCACCT TCATGGGAAT ATGCTTGGTG TGCTCCATTT TCGTTAAGGA TCGGGGCTTA CAATGCACGG ACGAACACCC TGTCCGTACG AGAAAGGATC TTGAGTCATC TGCATCCTCG TACACAGTCA ATAGTTAA
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Protein sequence | MDPSNKKEKD QVHIVEKVKR PHRDLDLSDQ LGDAHFNILP QRRIITILLI LALANLVSFA DQTGITVGLS AIASDLNSEK TINWAGTASL LANCVCQILF GRLSDIFGRK NVLMWCLAIL IIGQVACSTA RNGPEFYVFR ALAGIGNGGV SSLGMVILSD IVSLKDRGKY QGILGASVGL GNIVGPFVMS AFVKHYSWRG FYYLFAPLGC LVNVAIYFTI DGNTKLDGVL SKKEKFKKID YLGIIIASIA LTCLLVAISG SGTSFPWDSK LTITLFCVGG IAFIVFFLVE WKIPELPMIP LRLFKSPSMC LLFASTFLFG ATYFSLLYYL PYYFQIVRSK SEIQTSVFIV PLVAAQALMS IVGGQIITLT GHYFFVVCGG YALWLTGCGL LIIWNEHTSD GVLVVVMLII GTGVGFSFQP SMVAIQANCK KAERAVAIST RNVLRSFGGA IGIASGSTMI SNTLLNHLAQ IQGQSDLTEA TIDYLKDHIY SKINLAGVSA SEITTISQLY ISALRYYYYL IVTFMGICLV CSIFVKDRGL QCTDEHPVRT RKDLESSASS YTVNS
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