Gene PICST_28422 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_28422 
Symbol 
ID4851200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp1181931 
End bp1182716 
Gene Length786 bp 
Protein Length261 aa 
Translation table 
GC content43% 
IMG OID640392908 
Productconserved hypothetical protein 
Protein accessionXP_001387871 
Protein GI126274186 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.875052 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.031565 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCTCAA ATCTTGTCAT CTTACCGTGT CATGCTATTT GGAAAGGAGG TGCCTGTTAC 
GGAGAATCTG CTCAAGAATG GCATTTGGTA GACTTTCAGA AAGTAGGCTA CGACCACTTA
GCATTTAAGA ACCACATCAC GCAGAGTGTT TCGTACTTGA AAGAAAACAG TGATGCTTAT
CTCGTGATAT CTGGGGGTCA AACGAAAGCT GAACTGGGCC CTGTTTCTGA ATCGCTTTCG
TATTATCAGC TAGCAAGAAC TCTTTATGAA CAAGAGCATT TCTTTGAAGA AGTGAAAGAA
AGAATAACCA CCGAGGAGTT CGCCCGTGAT TCTTTCGAAA ACGTTCTCTT TCTGATTTGT
CGTTTCTACG AGGTTTTCCA GCGTTATCCC GAAAGGATTA CTATCGTAGG CTTTGAGTTC
AAGAGAGCGA GATTTCTCGA CCATCATCTC CACAGGGCCC TCAGATTTCC ATTAGAAAAG
GTTGAGTATA TAGGGAACTC GCCTGATCCC AAGGACTTGG ACCAAGAAAG AAGGCAGAAG
TACTTCGAAG ATTTGGATAA TAGCGAGTAC AAATTCGCGG TGAAGCATTT TGACCAGGAT
TGGTATGGAA TTAATGCTCC GTTGGCGACG AAGAAGATGG GTAGAAATCC ATATAATCGA
CACCATGGGT ATCAACTCAG CAATCCGGCA ATTGCTCTGT TTTTAAGTGG GGTTAATGGA
AGTATACCGG TTAGTAATGA GCAATTGAGA AGTTTATTGC AAGGAGTGCC CTGGATTAAA
GAATAG
 
Protein sequence
MPSNLVILPC HAIWKGGACY GESAQEWHLV DFQKVGYDHL AFKNHITQSV SYLKENSDAY 
LVISGGQTKA ELGPVSESLS YYQLARTLYE QEHFFEEVKE RITTEEFARD SFENVLFLIC
RFYEVFQRYP ERITIVGFEF KRARFLDHHL HRALRFPLEK VEYIGNSPDP KDLDQERRQK
YFEDLDNSEY KFAVKHFDQD WYGINAPLAT KKMGRNPYNR HHGYQLSNPA IALFLSGVNG
SIPVSNEQLR SLLQGVPWIK E