| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_28340 |
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| Symbol | |
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| ID | 4851117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Scheffersomyces stipitis CBS 6054 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_009068 |
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| Strand | - |
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| Start bp | 969415 |
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| End bp | 971529 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | |
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| GC content | 38% |
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| IMG OID | 640392825 |
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| Product | Leucine rich repeat protein |
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| Protein accession | XP_001387824 |
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| Protein GI | 126274103 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.669391 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.295604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATT TCTGCAATGG CTTTCAGCGG TTGCCAGATC ACTGTATCGA GTTCATAATC
AATACTTTGC CACTTTCTAC ATTGCAGAGT TTAATTTCCA ACGGTAGTTC TCCTTTCCAA
GAGCAATTTA AAAGAGCCTT CTACAGAAAT GTGATTGTAA CTAACTACAG TGGGAAAGAG
CCCAGAATCG ATTTAGGTTT CCTCAAAGAA ACTGAGTTAT TCAATTCCTT AGACGTGATC
ACCGCTCCCT TTGACTGTGA GACATTGTAT CAGCACATGG AAAAGTACCC ATATATCCAT
ATTCAAAATG CGACGTTTAA ACTTCACTCG TCTACCAACT CAATCGATTG GGTGCAAAAG
TTGGCTGATA ATATCAACAA AATACACATC AACTTTGATC CGTATAGATA TCATGATTCT
TTTCTTCTGG ACTTGTGCAG AAAGAGGCTA CCTAGCAAGG TTTTTGGTCT TTCCACGAAG
TATGTTAAAG ATATGTTATT TCCATTTTAC TTGCAATCAC TTGAATTGCA CCTAACTAAT
GATGAATTTG ATGTAAAAAG CCTTCCCCAA CACCTTGAAC ATCTTGCTAT TCATGTTTCA
AGACCTATGA CATTACTCTC AGAAAAGGAG TTGAATCTTC TACCCAGACA AATAAGATCT
CTCAGCCTAG ATAAATGCTT CCGTATTGTG GAAGAGTATG ATGGGCTTGT TAAGTTGGAC
TTGCCTACGC ACTTAACGAC ATTGAAGCTT CAGATGGAGT ACTCTGGAAA GTCAGTTATA
GACATATCTC ATTTAAGATC CTTGAACAGG TTTGATTCGC ATCTCTCTGA ATTACAATTG
TCTTATATGA AATTGCCTAT ACAGTTGAAT CGAATAAGGT GCAAAGGCTC ATTCCTCGAT
ACAGAACAAT TTCTTGATGG AATACAACCC AGCCTAGCTA ATTCAGAGCA TCTCGCAAAC
TTGACAAATG TAGACATTTG GGATTTGAAA TCAGAATCTT GCATCACTAT TCCAGACACC
GTCAGGGATG TATCTATTAT TTCAGCAAAC CTTGATTCTC CTTTGCAGCT GGTCATAACT
TTTCCAGAAG GCTTATCCCA GCTTCAACTC GACTATTGCA GACCTGTGGA AATGACACAG
GAACTTAGAC ACTTGACTTC TTTGAAGATC TTTGGTGAAG AAATCATTTT CTTGCCCAGG
ATGGACAATT TGCAGAAGCT AATGATACAT CATCTGAATA ACTTATTTCC AGGATTCTGG
GATTTCTTGG AATCTCTTAA GGAATTGCAA TTCTTAGAAA TCTCTGGATT TGGTATTGAA
ACAGTTCAAT ACTTGCCTCA TAAACTTGAA GAACTTGTTT TGAACGATAA CGTGATAAAA
GAATTCTGCT TTGAGTTGCC TCCCAATATA AAATCTATTT CTCTACGTAT GAACAAATTA
AGCAAGTTCA TTGTTAGTGG AACCAGTAAA TTGAAGAAGT TAATACTTGA TGATAACCTG
TTCAAAGTTT TGACGGCCTC CTGCTTGCAA ATACCAGACA GTATTTGTGA ATTGTCTATG
GACTTTTGCC ATATCACTTC AGTGGATAAG CACTTTAATT TTCCTGAGAG TACGCGCTTG
CTTCGTCTCT CCAACAATAG AATAGAAAAT GTAGAGAACA TTCTATTGTC ATTGCCTCCT
CGAATTGTCT GTTTCAATCT AAGTAGGTAT GACAACAGGT CTAGAACTCC GGTGACAAGA
AAAAGAATCG ACGTCAGAAG CAAGTCACTT TGGAATGTTG ATGTAAATAA TGCTCTCATG
GGTCATGAAG TTGTATGGAA TGGTTGCACC AATTTGCAGT ATATCAACTT GGCTAACAAT
TTGTTGGGAA ACGTCGACAC CAATTGCTTT CCCCTGTCAC TCAAAGGCAT CAAGTTCAAC
CACTCAACTA TAGACAAGCT TGAGGGTGGC TTTGAAAGGT TTGCTGATTT AGAAGAGGCT
GACTTGCGCA ACTGCTCCGG AGAGTTTGCT AAAACCGTAA CTGGACTGGA TGCATTTGGA
CCAAAAATAT TAGTTACTCA GCATTTAGAA GAACCAACGA ATGGAATTCA ATCTTTGAGT
CTTTCGCAGC AATAA
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| Protein sequence | MSDFCNGFQR LPDHCIEFII NTLPLSTLQS LISNGSSPFQ EQFKRAFYRN VIVTNYSGKE
PRIDLGFLKE TELFNSLDVI TAPFDCETLY QHMEKYPYIH IQNATFKLHS STNSIDWVQK
LADNINKIHI NFDPYRYHDS FLLDLCRKRL PSKVFGLSTK YVKDMLFPFY LQSLELHLTN
DEFDVKSLPQ HLEHLAIHVS RPMTLLSEKE LNLLPRQIRS LSLDKCFRIV EEYDGLVKLD
LPTHLTTLKL QMEYSGKSVI DISHLRSLNR FDSHLSELQL SYMKLPIQLN RIRCKGSFLD
TEQFLDGIQP SLANSEHLAN LTNVDIWDLK SESCITIPDT VRDVSIISAN LDSPLQLVIT
FPEGLSQLQL DYCRPVEMTQ ELRHLTSLKI FGEEIIFLPR MDNLQKLMIH HLNNLFPGFW
DFLESLKELQ FLEISGFGIE TVQYLPHKLE ELVLNDNVIK EFCFELPPNI KSISLRMNKL
SKFIVSGTSK LKKLILDDNL FKVLTASCLQ IPDSICELSM DFCHITSVDK HFNFPESTRL
LRLSNNRIEN VENILLSLPP RIVCFNLSRY DNRSRTPVTR KRIDVRSKSL WNVDVNNALM
GHEVVWNGCT NLQYINLANN LLGNVDTNCF PLSLKGIKFN HSTIDKLEGG FERFADLEEA
DLRNCSGEFA KTVTGLDAFG PKILVTQHLE EPTNGIQSLS LSQQ
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