Gene PHATR_54656 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATR_54656 
SymbolHSP20 
ID7204695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011679 
Strand
Start bp605350 
End bp606097 
Gene Length748 bp 
Protein Length216 aa 
Translation table 
GC content47% 
IMG OID 
ProductHSP20 
Protein accessionXP_002185743 
Protein GI219121023 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.222487 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CACAACTCAA ACCAAGCACC ATGCGCACTA CAATTTCTAC GATCATTGCT ATCCTCGGGG 
CTACAGCTTT GGCTGAAGGC AGAACTCATG GGTCTGTTCT AGCCCCGCGT CATTATCTAT
ACAGTCGTCC GAGAGATGCC TTCGATCTAG TAAGCGACAT GTTTTCTATA CCCTATTTCA
ATCAAGACAT ACTGCCTTCG CAGTCAAACA CTTTCCTGCG CCAAATGCAT TCGCAGCTTG
ATAGAGCGGC TCGTTCCGAG ACGCCCCGGT ACGATGTATA TCAGGATCCT GAAACCGGAA
TGATTGAAAT GACAATGGAA GTCCCTGGAA TTCACGCTAG AGACCTCACT GTGGAACTTG
AGAATAAAAG GCTTCTAAGA ATCAAAGGAT CCCGCAAATC GAGGCAAAAT GGATCGCTTC
AAGAGTCAAC TTTTGAGCAG TCGTTCCAAA TTGACGAAAA TGTCGATCCC GACAACTTGA
AGGTGACTCT TTCCGCTGGA ATTTTGCGGA TTCAAGCTCC AAAGAAAGAA CGCCTCGTCA
AGCGCCTCGA CATCGCCACC ACTGGAGAGG AAGCGAGCTT GATGGTAGAG TCGAAGGCGG
ATGCAGTACA TGACGAGTCA AAAGAAAAAA CCGTGGACGG TCTTGAGATC TCGACCGAGG
ATCTTGTGTA GCTCAGGCCA CTGGACAAAG GAGCCATTAG ATTTAAGATT CTTTGCTTAA
ACGCTTAGTA GAAGTATTGT TAGATGAC
 
Protein sequence
MRTTISTIIA ILGATALAEG RTHGSVLAPR HYLYSRPRDA FDLVSDMFSI PYFNQDILPS 
QSNTFLRQMH SQLDRAARSE TPRYDVYQDP ETGMIEMTME VPGIHARDLT VELENKRLLR
IKGSRKSRQN GSLQESTFEQ SFQIDENVDP DNLKVTLSAG ILRIQAPKKE RLVKRLDIAT
TGEEASLMVE SKADAVHDES KEKTVDGLEI STEDLV