| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_54535 |
|---|
| Symbol | MMSDH |
|---|
| ID | 7201170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011677 |
|---|
| Strand | + |
|---|
| Start bp | 542488 |
|---|
| End bp | 544181 |
|---|
| Gene Length | 1694 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | methylmalonate semialdhyde dehydrogenase |
|---|
| Protein accession | XP_002180457 |
|---|
| Protein GI | 219119391 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.414101 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TCTGGGTAGA GCCTCGGTGC ATCAACTGTT CCCGCGCAAG TCGTTTCTCC TCTCTTTCCC
AATGGCGACG GAAGCAATGG CCTCCGGCAG CACGAACGGA ACTTCCGTCC CGAAAGTGGA
CAATTTCATC CACGGAGTCT TTCTGGCACC ATCCACGCAA CAATATCTGG AAGTCACCAA
CCCCGCCAAC GATCACACGA TTGGTCTCGT CGGCGTGTCC GAGATCGACG ACGTGCAAGC
CGCCGTCCAA GCGGCACAGG ATGCCTTTCC CGAATGGTCC GGCTGGACTA CGAAAGCCCG
TGCCGCTGTC ATGCTCAAAT TCCACGCACT CGTACAGGAA CACGCGGAAG AACTCGCGCG
TTTGATCGTC GCCGAAAACG GCAAAAATCT GACGGAAGCA CTGGCGGATG TTGCCAAGGG
GAACGAAACG GTGGAGTACT CGTGCAGTTT GCCCCAGCTT GCACAAGGGA AAACGCTGTC
GGTGAGCAGT GGCGGTGTGA GTTGCCAAGA TCGTCGCGTT CCACTCGGAG TCGTGGCTTC
GATTGTACCA TTCAACTTTC CCTTTATGGT ACCCATGTGG ACCATTCCCA TCGCTCTCGT
CATGGGTAAT ACTATGGTAC TCAAACCCAG CGAAAAAGTT CCGCTGACGA TGCACCGAGT
TGCCTCGCTT TTGCAACAAG CCGGCCTTCC CGACGGAGTC TTCAACATGG TGCAAGGCAC
GCAAGCCGCC GTCCAAGCCT TGATTGCGCA CGAACACGTC AAGGCTGTTA CTTTTGTCGG
TTCGTCGCAC GTGGCACAAT TGGTGGCGAC GTCCTGTCGG GGACTGCACA AGCGTTGTAC
CGCACTAGGC GGGGCCAAGA ATCATTTAGT CGCCTTGCCC GATTGTGACG TGGAAAGTGC
CGCCCGCGAT ATTTGCGTCA GCTTTGCAGG CTGCGCCGGA CAGCGGTGCA TGGCGGCATC
CGTTTTGTTG TTGGTGGGAA CGGCACAAGA GACGCTGCTC AATATGGTAG TGCAAAATGC
AGCAAGTTTA GCGCCAGGTA GTGAGCCTGG ACAGGTGGGA CCGGTGATTG ACGTGGTTTC
GTACGACAAG ATTTTGCGGT ACATTGCACA GGCGGAACAG GATGGTGCCA AAGTTTTGTT
GGACGGAAGG GGATGGAAAC GCAAGGAAGG TTGTTGGATT GGGCCGACTG TGTTGCTGCA
CTCGAGCCCG ACCGATACAA CCATGACGGA GGAAGTTTTT GGACCAGTCC TCTCCGTCTA
CGTCTGTAGT TCTTGGGAAG AGGCCATTGC GATTGAAAAA GCTAACGAGT TTGGCAATGC
TGCATCGATC TACACGACGA ATGGGGCGAA TGCGGAATGG TTCCTGTCGC GCTTCCAAGC
CGGCATGTTG GGCACCAACA TTGGGATTCC GGTCCCCCGG GAACCCTTTT CGTTTGGTGG
CTTGTACGGA ACCAAAAGCA AATACGGCGA CATGGACATA ACGGGAGATG GCGGAATGGA
ATTCTTTTCC AATCGAATCA AAATTACAAG TAAGTGGCCT CTCAAGCGCA CGGCCGACAC
AATGCTCAAC GGCGTCGGTC CCAGCAATGG GACAGTCGCG AGCGGAACGG CAAAAAAGAC
TGTGGATCAA GCCAACTTTG CGGGCAGTAT GTAATTTAAG CTTGCGACAG CATTAGTCAT
AAAGTATATC TGAC
|
|---|
| Protein sequence | MATEAMASGS TNGTSVPKVD NFIHGVFLAP STQQYLEVTN PANDHTIGLV GVSEIDDVQA
AVQAAQDAFP EWSGWTTKAR AAVMLKFHAL VQEHAEELAR LIVAENGKNL TEALADVAKG
NETVEYSCSL PQLAQGKTLS VSSGGVSCQD RRVPLGVVAS IVPFNFPFMV PMWTIPIALV
MGNTMVLKPS EKVPLTMHRV ASLLQQAGLP DGVFNMVQGT QAAVQALIAH EHVKAVTFVG
SSHVAQLVAT SCRGLHKRCT ALGGAKNHLV ALPDCDVESA ARDICVSFAG CAGQRCMAAS
VLLLVGTAQE TLLNMVVQNA ASLAPGSEPG QVGPVIDVVS YDKILRYIAQ AEQDGAKVLL
DGRGWKRKEG CWIGPTVLLH SSPTDTTMTE EVFGPVLSVY VCSSWEEAIA IEKANEFGNA
ASIYTTNGAN AEWFLSRFQA GMLGTNIGIP VPREPFSFGG LYGTKSKYGD MDITGDGGME
FFSNRIKITS KWPLKRTADT MLNGVGPSNG TVASGTAKKT VDQANFAGSM
|
|---|
| |