Gene PHATRDRAFT_54511 details

Gene Information

• Locus tag: PHATRDRAFT_54511
• Symbol: COPbeta
• ID: 7201531
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011677
• Strand: +
• Start bp: 84499
• End bp: 88041
• Gene Length: 3543 bp
• Protein Length: 978 aa
• GC content: 51%
• Product: predicted protein
• Protein accession: XP_002180373
• Protein GI: 219119217

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGGCTCATCG TTGCTCGGTC GTTGGCAAAT GACCATGACG CCCGCCAACT CGAACGAAAG 
CTATTGTACC TTTACACTCG CCTTGGATGT GACCGCAGGA GGACTTCCGT CAGAGGCTGA 
GATAGCCAAA GATTTGGAGT CGAATGACGC CAATGTACGT TGACTAGCGA TCGAGAACGA 
CTGAATCCAA TGTAAACAAC TCTACGAGGT AGAACTATAG CGGCAATCGA TGTTACTGTT 
CGTCCCTTCG AGTGTCACGG TTTTGCTGGC GGATGTCTAT AGACACAGGT CTTTGCATTT 
ATTTAAAGGA TCATGGAACT TACCCTTTGC CCCTTTTTTT CGTGTAACGC GTAGGTCAAG 
AAGCTCGCTT TGAAAGCTGC CATTATGGCA ATGCTCGGTG GAGAAGCCAT GCCGCGCATT 
CTCATGCAAG TCATTCGGTT CTGCATTAAT TCCAACGACA AGCAGCTCAA GAAGCTCTGT 
ATGCTTTACT GGGAAGTCGT TCCCAAGTAT CAGGAGCCTA CGTCGGAAGA GCTTTTGGCG 
GCAGCCTCCG GAGGTCCTTC CGTACAGCGA AAGATGCTTC CGGAAATGCT CCTCGTCTGT 
AACGCTCTCA TGAACGATCT CAATCATCCC AACGAATACG TCCGCGGATC CATGTTGCGA 
TTCTTGTGCA AAATCAACGA CGCCGAAATC CTCGGTCCGC TCATTCCCTC CGTCAAGTCT 
TGTCTCGAAC ACCGACATCC CTACGTGCGC AAAAATGCCG CGCTCGCCGT ATTCCACGCC 
CACAAGTTAC ACGGTGAAAC CTTATTGCCC GATGGACCCG AACTCGTCGC CGCATTTCTG 
GAACAAGAAA CCGATGTTGC CGCTCGTCGC AACGCATTCT TAATGCTCTT CAACGAAAAC 
GAAGATCTCG CCATTGACTT TTTGGCTCGC AATATGGATG ATGTGGGCAA ATACGGGGAT 
GGCTTTGCCT TGCTCGTCCT CGAACTCACG CGTCGAGTGT GTCGCAGAGA CCCCTCGCAA 
AAATCTCGAT TTGTCCGTGT CCTCTTCCAG ATGCTCTCCA GTACCTCCCC CGCAGTTTCC 
TACGAAGCCG CCTGGACCTT GGTCACGCTC AGCTCAGCGC CGACGGCGGT TCGTGCCGCT 
ACCTTGACCT ACATCAACTT GCTGAACGGA CAAAACGATA ATAACGTCAA GTTGATCGTT 
CTGGAGCGAT TGGAAGGGCT CAAAGACAAG CACTCCAAGA TTTTACAAGA ACTGCTTATG 
GATGTCCTGC GGGCCCTGGC GAGTCCCAAT CCGGATATTT GTCAAAAGGT CTTGGCCGTG 
GCCATGGACG TGGTCACGAG TCGCTCGGTC CAGGAAGTCG TCAACGTCCT CAAACGCGAA 
GTCCAAAAAA CCGTGTCGGA AGAAGCATCC ATCGAAGGAA AGGGTGCGAG TTATCGCAAT 
ATGCTCATCA AGGCGATTCA CGGTTGTGCC GTCCGCTTCC CACAAGTCGC CGAGTCGGTC 
GTCCACACAC TCACCGACTT TTTGAGCACG GACAGTGGTA TGCAGGTTAT TATCTTTGTA 
CGCGCTATTG TGGAACAGTA CCCGGAGCTT CGGGCGCCGC TTCTAGCCAA GCTCGTCTCC 
ACCCTGGAAG ACGTCACCTC GAATCAAGTG TTCTGCGTGT GCCTCTGGAT TTTGGGTGAG 
TATTCCGAGA CAGCGGACAG CATCACCGAC GCTTTCAATA CAATTACGGA ACAGGCAGGA 
GAACCTCCCT TTATTCTCAA GAACGCAGAG AAGGAAGAAG CAGAAAAGGC TGCGGCCGAA 
GCCGAAAAGG CCGCTCCCAA AATTGTTTCC AAAAACGTTG TTTTGGCTGA CGGCACTTAC 
GCGACGCAAA CGATCTACAG TGAAGCGAAA ACTCCCGTTC ACGACTCGGT CAATTCCCTG 
CGTCGCATGT TGATTGGAGG GGATGTTTTT CTGGGAGAGA CACTGGCTTC GTCGCTGACC 
AAGCTTTGTT TGCGCGGTGG CCTTTGTCCC GAAATGGACC CACTTGCTTT GAAAGCTATG 
GTGGCCAAGT CCGTTCTCGT CATGTGCGGC GTTGTCAAAA TGGCCGAAGT TACGATCGCT 
GCCCAGCGCA CATCCCTATC GGACTGTCAA GAACGTATCA CTCTTTGCTG CCGTGCCCTG 
ATTGATCCCA AAGCGCAAGA ACTTCTCAAA CCAACTCTTC TCGAAGGTGG CCGTGCCCGT 
TTCGGAGAAT TTCTCAAAAT TCTAAAAGAT AAGGAAGCCA AGGAGAATAA AAAGAAAGAG 
TCAGACAAGG AGATCACAAC GCAAGCCGAC GACTTGATTC ACTTTCGCCA ACTCAAATCG 
ATGGCGGTCC AGGCCGGTGA TCTAGATTTG GACGACGGTT CCGATTTGGC TCGGGCTACT 
GGATACGACA ATGCCGGCTC GTTGTTGAGC TCGGAGTTGA GCCACGTGTA CCAGCTCAGT 
GGCTTTGCCG ATCCAGTCTA CGCTGAAGCT TTAGTGACGG TCCACGATTA CGATATCGTA 
CTGGAGATCC TCGTTATCAA CCGAACCCCC AATACTTTGG CTAATTTGAC GGTAGAACTT 
GCGACGATGG GTGACATGAA GATCGTGGAA CGGCCACAGG CTCACACGAT TGGCCCGCTT 
GATCAAGTGA CAATTCGAGC GTCCATCAAG GTTAGCTCTA CGGAAACCGG ACATATCTTT 
GGCACTATTG TGTACGAAGA CGCGGCGACA CGGGAGAAAG CTTACGTCAA CCTGAACGAT 
ATTCACATGG ATATTATGGA TTACATTCGC CCAGCTTCGT GTACCGACGA GGTTTTTCGA 
TCTATGTGGG CGGAATTCGA ATGGGAAAAC AAAGTCGCCA TTTCGACCTC CATTGCGTCC 
TTGTTGGGTT TTCTGAGCCA CATTGTCAAG TCCACAAATA TGACGTGTCT CACGCCGCAC 
GACAAGACCG AAAAGGGTTC CTTTTTGGCA GCCAATTTAT ACGCTCGAAG GTAAGCTACG 
CATATGGTAC TTGGTTGTAG GTCGTCTGTC CGAGGTCTTT TTGTTGTTGC TTTGCCCCGA 
TTTCGTGTTA GATGCCGGAA GCCGTCTTCA TCGGTCGGGA TCTGTTAATA TCGGGGGAAA 
TTGGTGGAAG GCTGAGAACT TAGCGCCGAC AAGGCGTTTC TCGGTCTGGT CGGCATTATT 
GCAAACACTG TCTTCACTTT TTTGGAGTCA GGGTATCATA TTGTCGATAC AACTGTATAC 
TGGTGATCCG TGCGTTGCTC ACATATTCGT CGTTGCTTTT GCACTGACAG TGTTTTCGGA 
GAAGACGCAT TGGTGAACGT GTCGGTCGAA AAGAAGGACG ACAATGACGG CAAACTGGCT 
GGCTACATTC GTATTCGCAG CAAGACGCAA GGCATAGCTT TGAGTTTGGG AGATCGCATT 
ACTTCGGTCC AACGTGGCTT GCCGGAAACG GTCAAGGCAC AGTAAGCATA GAAACCGGCG 
GTGTAGTACG TACAGTCACG GGCATGGATA CATTTTATTT TTTAAAACGT TCGTTGCGGT 
TAC 

 

Protein sequence

MTMTPANSNE SYCTFTLALD VTAGGLPSEA EIAKDLESND ANVKKLALKA AIMAMLGGEA 
MPRILMQVIR FCINSNDKQL KKLCMLYWEV VPKYQEPTSE ELLAAASGGP SVQRKMLPEM 
LLVCNALMND LNHPNEYVRG SMLRFLCKIN DAEILGPLIP SVKSCLEHRH PYVRKNAALA 
VFHAHKLHGE TLLPDGPELV AAFLEQETDV AARRNAFLML FNENEDLAID FLARNMDDVG 
KYGDGFALLV LELTRRVCRR DPSQKSRFVR VLFQMLSSTS PAVSYEAAWT LVTLSSAPTA 
VRAATLTYIN LLNGQNDNNV KLIVLERLEG LKDKHSKILQ ELLMDVLRAL ASPNPDICQK 
VLAVAMDVVT SRSVQEVVNV LKREVQKTVS EEASIEGKGA SYRNMLIKAI HGCAVRFPQV 
AESVVHTLTD FLSTDSGMQV IIFVRAIVEQ YPELRAPLLA KLVSTLEDVT SNQVFCVCLW 
ILGEYSETAD SITDAFNTIT EQAGEPPFIL KNAEKEEAEK AAAEAEKAAP KIVSKNVVLA 
DGTYATQTIY SEAKTPVHDS VNSLRRMLIG GDVFLGETLA SSLTKLCLRG GLCPEMDPLA 
LKAMVAKSVL VMCGVVKMAE VTIAAQRTSL SDCQERITLC CRALIDPKAQ ELLKPTLLEG 
GRARFGEFLK ILKDKEAKEN KKKESDKEIT TQADDLIHFR QLKSMAVQAG DLDLDDGSDL 
ARATGYDNAG SLLSSELSHV YQLSGFADPV YAEALVTVHD YDIVLEILVI NRTPNTLANL 
TVELATMGDM KIVERPQAHT IGPLDQVTIR ASIKVSSTET GHIFGTIVYE DAATREKAYV 
NLNDIHMDIM DYIRPASCTD EVFRSMWAEF EWENKVAIST SIASLLGFLS HIVKSTNMTC 
LTPHDKTEKG SFLAANLYAR SVFGEDALVN VSVEKKDDND GKLAGYIRIR SKTQGIALSL 
GDRITSVQRG LPETVKAQ