| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_54394 |
|---|
| Symbol | LKRSDH |
|---|
| ID | 7200003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011674 |
|---|
| Strand | + |
|---|
| Start bp | 1004174 |
|---|
| End bp | 1007337 |
|---|
| Gene Length | 3164 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | saccharopine dehydrogenase |
|---|
| Protein accession | XP_002179334 |
|---|
| Protein GI | 219117079 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCTATACTTG GCCAGACATT CGGGGTACGG TTCCACACCA TGTCCATGCG CGAGTACTCC
ACTATCCTGC GAGAAGCCGG ATTGACCACT CCTGGTCCCG ATGGAGCCGC CGACAAACTG
CAAATCGAGC ATGTATTCGT CGTGACGCTC GGTGAAAATC TCGAAAGGAT GGTCCACAAA
CTAGTCGATA CCACCTTGCT CCTCTCCCTC AATTTGATAC GCGCACTCAA AGTTCTCTCG
TACGCATCAT CTGCATTTCT TCTCCTTTAC GGGACCTCGA AACTCATCCA AGCCATCCAG
GGGAATGCGA GCAGTCCTGG GAGTACTACC GACCCCAAAA CTCTGTAGTT GGAAGAGCTA
CCCAAAGGAG TCTCTCCACG GGGTCGGCAC TCTCTCGACA CGGTCGCAGA ATATATCTCT
TTCGTGAAAC ATCGTGGCCC TTTGACGTAC AACATACGAA CGTACAAAAT GGAGATGGGT
GAGATTCGTT CGTGTCTTTC GAGTGGGGGA TTGGCACCAA TCGTGGAAAG GAGACAACCC
AATCAACCTG TGTTTGCATC CTTCTCTTCC GTTCCGGTTG GTCTCAGTGG AGGGGAGGCG
GGACGAGTTG GATTGATTTC TTTCCCAAAT ATCACAAAAG TTGCCTTTTT ATCGCCCAAA
AACGACAGCT AATGCTAGAA ACAAGTGTCG CCACATACAA CACCGGTTTC TCTTTACCGC
GCTGAGTCTG CAAATTGGCC TTTCTGTAAA TCCTTCATTG ACAGTGAGAT TAACTGTGTG
GCCACCTGTT TCATGCAATG CAGTTATTCT CCGCATCGGA ACTCCAACAT CCTCAAAGAT
GCAAGACTTG TCGTCCTTAC GTGTACATCA TACAGTATCG TGCCTGCGAG GATACCTTCG
ACATTGTCGG GATCAAAGGA TTCGCCACTC CACCACGTCC ACAAAAGCTC ACCCTTGCAT
GATTATTGGG ATTTTGCGGG AATCCTATAA CGTTTGGGAA CGCCGAGCAC CACTCACTCC
CGATAACGTA CAAGTACTCC TGTCTAGCAA TCCCGGTCGC TCGCGCATCC TCGTACAACC
TAGTCGTCGC CGGGTCTTTC AAGATCTAGA ATATCGCAAA TCCGGTGCCG TTGTCACGGA
AAGCCTGAAA TTGCCGATTG CACCACGGAT CATGGAATAT CAGTGTTGGC AGTGGACATT
TTGCCGACAG AGTTCCCTCG GGAAAGTAGT CAACACTTTG GACAAGAAGT GATAAAACTT
GCTCAGGAAA TGGTAAATAC CACGACAAAG CAGGATTTTA GTATACAGGG TCTAGATACG
ACGTTGATTT CGGCCCCGTT GGTAGGTTGC TTTGGTAACC TTAGCAATTT TCAGCGACAG
TCAAAAAAGG GCTCCTCAAC ATAGTGTACT TTTATTTCTT TCTGTCTTTT CGGTAGGCTG
AGGCGTGCAT CGCAAAGATC GATGGAACGC TTGAGCAAGG ATTCCGCTAT CTTAAAAAGA
GCACCAACAG CACAGATGTC CGCAAAATAT TCAATCGTGC TTCTATTGGA AGGCCACTTG
TTTGATTCGG GTTTTATCAA CCAAGTCCTG GACGTGATTA AAGGAAATGG CTGTGCAATA
GAATTTCAAG AATGCACCTT TCCGACACAA TCTGCTGAAC GGAAGAGCGC AAAATCGCTG
GTCATACTCA GTATACCGGG ATCCGATGCA GCTGCCCTCG GAAAAGTTGA ATCCAAAATT
CACATTCTTG CACAAGTAAT TGAAAAGGCG GAAGCAACAA TCACCAGAGT GGATCACCAA
AGGATGGATG ACAACTTCAC GCAAACACTG GTGAACGTGG AAGTGCCCAA CATTTCCAAG
AGAATTCTTG TATTAGGGGC TGGTATGGTT TCCAAAAGTG TGGTTGACCT TTTGGGCCGG
TCGGCGAATC AAGAAATCAC CGTGGCCAGT GAGAACCACG AGGAAGCCCG CCTTACAGCA
GCCTTCTCTA AGCATGATCG CCACGTTGGC CTTGGTGTGG TCAATGATGT CAAGCGTCTC
TCTGATCATA TTGAAAGCGC TGATAAAGTA GTTAGTTTAT TACCGCCCCC GATGCACTTT
CAAGTGGCGC TGGACTGCAT CAAGCACAAA ACTGATCTTG TGACAGCAAG CTACGAAACT
TAAGATATGC ACCGGATAAA GGGCCGAGCC AAGGAGGCTG GTGTTATTAT ACTGAATGAA
AGTGGATTAG ATCCTGGGCT TGATCACATG AGTGCGATGA AAAAAATCGA TGATATATTA
TCTCGGGGTG GCCGTGTCAC GGTGTTCGCA AGTGTGTGCG GAGGACTGCC GTCTCCGGAA
GCAGCTGACA ATCCTCTGAA GTACAAATTT AGCTGGAGTC CAAAGGGTGT AATACAGACC
AGTCAAAGCG ATGCTCGGTA TCGATGGGAG GGTCAGGTCC TTCAAGTACA TGGGAGCGAT
TTGCTCGCTG CTGCGGCTCC TTTCCTCCAT GCATGGCCCA AACTTGGACT GGAATGCTTG
CCGAACCGTG ACTCGCTTCG CTACGAACAT ATATACAACA TCGGAGGCGC TAAAGCTACA
TTGCGATATC GAGGTTTCTC AAGCTGCTCT TATGGGCTTT TTTGCGTCAA CCGAAGATTT
ACGGAGGTGA TTGGCATACA AATGTAGAGC AGCTTCGTGA TCAACGTGGT GGCTCTCTGA
ATGTGGAAGA CTTTATACTG GCATGCGTTG CCGACAATTT TGACGAGGCT GTGGCTGTCT
TGGATACTTT GATTTGGCTT GGGGTTCTAC CAGGACACAT TCCGGTGTCT GGCAGCAACA
TCGTGGAAGC CTTCTTCAAT TTTTTGGAAG ACAAACTGCG GTACAAAGAA AGCGAAAGCG
ATATGGTCCT TATGCACCAC ATAATCGAGG CCTCTTTTGA ACGAGCCAGA AGCGAGCGCC
ACCTCGCCAG TCCGCAAGTT TTTGGAGAGG AAGGTATTTC CGCCATGGCA AAGTGCGTTG
GCTACACTAC AGCATCATCA GCTGGGCTGA TTCTTAGCTT TGCATTAGAT GATCTGCTCG
GCCTTCTCCT TCCGACATCA CCACGTGTTT ATGAGCCTGT CCTTGCGGCG AAGAAGGAAT
CGCCTTCCAC GAAACGTGCA CATCAGATCA GGCAAACGAG ATAG
|
|---|
| Protein sequence | MQDLSSLRVH HTVSCLRGYL RHCRDQRIRH STTSTKAHPC MIIGILRESY NVWERRAPLT
PDNVQVLLSS NPGRSRILVQ PSRRRVFQDL EYRKSGAVVT ESLKLPIAPR IMEYQCWQWT
FCRQSSLGKV VNTLDKKLRR ASQRSMERLS KDSAILKRAP TAQMSAKYSI VLLLEGHLFD
SGFINQVLDV IKGNGCAIEF QECTFPTQSA ERKSAKSLVI LSIPGSDAAA LGKVESKIHI
LAQVIEKAEA TITRVDHQRM DDNFTQTLVN VEVPNISKRI LVLGAGMVSK SVVDLLGRSA
NQEITVASEN HEEARLTAAF SKHDRHVGLG VVNDVKRLSD HIESADKVVS LLPPPMHFQV
ALDCIKHKTD LGRAKEAGVI ILNESGLDPG LDHMSAMKKI DDILSRGGRV TVFASVCGGL
PSPEAADNPL KYKFSWSPKG VIQTSQSDAR YRWEGQVLQV HGSDLLAAAA PFLHAWPKLG
LECLPNRDSL RYEHIYNIGG AKATLRYRGF SSCSYGLFCL RDQRGGSLNV EDFILACVAD
NFDEAVAVLD TLIWLGVLPG HIPVSGSNIV EAFFNFLEDK LRYKESESDM VLMHHIIEAS
FERARSERHL ASPQVFGEEG ISAMAKCVGY TTASSAGLIL SFALDDLLGL LLPTSPRVYE
PVLAAKKESP STKRAHQIRQ TR
|
|---|
| |