| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_51511 |
|---|
| Symbol | Rab5a |
|---|
| ID | 7197170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | + |
|---|
| Start bp | 520362 |
|---|
| End bp | 521419 |
|---|
| Gene Length | 1058 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177632 |
|---|
| Protein GI | 219111761 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.471468 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAATC ATCCCGGGAG TGCGGCGAAT GCCCGCGTGC ATCACTTCAA GCTCGTCTTG
TTGGGAGACA CGGCCGTAGG AAAGTCCTGT TTGGTAGTCC GCTTCGTGCG GGACGAATTC
TTCGAATTTC AAGAACCCAC GATTGGAGGT AAGTTTGTAA AAACACCCAG TTGATCGAAA
GACCGACAGC AACGATTTCG GCAAAGTCAC ATTCGTCCGT CCCGAGTCTC GGAATGAAGT
TTACCAAACG GAGCGGGTTT CTCCCTGCGG TCATTCTTCC AGTTTTCGTG CAGCGAACAC
TTGGCGAGAG GAAATTCCCG TTAGACGCAA TGAAAGTGCT GAAAGGAAGC ACGTCTACAG
TTGGGAGTAA CGAAGTGGTT GAGGTTCGAT TCGGTTCACT CGTTCGCTTG TTGACGTTAA
CTGCGGTATG CTCAAACTTG TGTTCACTGG GAAACGCACG ACTCTGACAC CGTGTGACTT
CTTCCTCTTG TAGCCGCATT TTTGACACAG ACCGTGCAAC TGGATGACGC CACGGTCAAG
TTCGAAATTT GGTACGTACA ATAGCCGCGA ACAGGCACGC TGCGACACCG CAGTCTTTCT
TTTTCGGTTT TCCTCAAATT GCGTCTGCTC TGTTGGGCCA ACGTCCACGA TTCGACAGGG
ACACGGCTGG ACAGGAACGT TACCGATCGC TCGCACCCAT GTACTATCGC GGTGCTTCCG
CCGCCATTGT AGTGTACGAT ATTACCAATC CCGATTCCTT CACGGGCGCC AAGTCCTGGG
TGAAGGAATT GCAACGCCGT GGTGATCCCA ACGTGGTGAT TGCCTTGGCG GGCAACAAGG
CCGATCTCGA AACCCGTCGG GCCGTCGAAT TTGAAGAGGC CAACGCGTAC GCACAGGAAA
ACGGTATTTT GCATCTAGAA ACGTCGGCCA AGAACGCCAA CAACGTCAAA TCGCTCTTTA
TCGAAATCGC CAAGACACTT CCCAAGAACG CTCCCCAGCC CGAGAAGGAA GCCTTTCCCA
TTCTACAGCA ACAGCAAGAG ACGCGAAACT GTTGCTAG
|
|---|
| Protein sequence | MANHPGSAAN ARVHHFKLVL LGDTAVGKSC LVVRFVRDEF FEFQEPTIGA AFLTQTVQLD
DATVKFEIWD TAGQERYRSL APMYYRGASA AIVVYDITNP DSFTGAKSWV KELQRRGDPN
VVIALAGNKA DLETRRAVEF EEANAYAQEN GILHLETSAK NANNVKSLFI EIAKTLPKNA
PQPEKEAFPI LQQQQETRNC C
|
|---|
| |