| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50671 |
|---|
| Symbol | |
|---|
| ID | 7196483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | + |
|---|
| Start bp | 1231427 |
|---|
| End bp | 1239735 |
|---|
| Gene Length | 8309 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | |
|---|
| GC content | 46% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002176747 |
|---|
| Protein GI | 219109989 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATTTGACTGT TAATGGATCA CCAAGCTGGA TGGAATCAGA TCGACTCGAG CCAACGAAGA
GAGACGATCC AAAGGTTTTG ATATAGCAGT CATCCTCGGC AGAGCTTCTT GCGAGCCTTT
CTAAATCGGC AATTGTATAC TTTCAACAAA GACATTTTGA AAGATGGGGG TGATGGAAAA
AATAAAGGAG ATTGAGGCCG AGATGGCGAG AACTCAGGTA TCGTGATTGT GGGCTAATTG
CAGTAGAGGA GGGTGGTGGC CATGGAATTG AAAAGGCTTA AGCTAACTAC CGCGATTCAT
CTCTCCGTGT TATAGAAAAA TAAAGCAACA AACTCTCATC TTGGTCTTTT GAAAGCCAAG
CTAGCTCGAT TGCGAAACGA ACTTTTTGTG GAGCAGTCAG GAGGTGGTGG CGGCGGTGGA
GAAGGGTTCG ACGTTGCTCG CAACGGTGAC GCCAGAATAG CCTTGATTGG TTTCCCAAGT
GTTGGAAAAT CGTCTCTACT CAATAGCCTG ACGACAACTG AATCAGAGGC CGCGGGGTAC
GAATTTACGA CGCTGACTTG CATTCCAGGT GTTCTTCGGT ACAAGGGATC AAAAATGCAG
GTACTTGATT TACCTGGAAT TATCGAAGGT GCAGCCCATG GAGCAGGTCG AGGTAGGGAA
GTCATTGCTG TTGCTCGATC GGCGGACGCT ATTTTGATTG TTCTGGATGC CGGTAAGGAA
GGACTCCAGA AGCATCGTGA AATTTTGGAA AGGGAATTGG AGACTGTAGG AATTCGTCTC
AATCAAAGAG CCCCGGACGT AACTTTGACA AAGCGAAAGG CTGGAGGTGG TGTACGATTC
GCCTCAACTG TTCCACAGCC CCTTCTGGGT GTAGAGCCAG AGAAGCTTGT GACACAAATT
TTGCGCGAGT ATAGAATCAC ATCCGCGGAT ATTTTGGCAC GTGAAGAAAT AACCGTCGAT
CAGCTTGTTG ATGTAATACA GGGAAATCGC GAATACAAGC CATGCCTATA CCTCTACAAC
AAGATTGACA CTGTCACCGT TGAAGAAGTC GACCAGCTAG CTCGTATGCC TTATTCAATT
GTTGGGAGTG TGGCTCAAGG TTTCAACATA AGTGGACCCT TCGAAGACGA TCGTTTGAAA
CAAATGATGT GGGACTATCT CGGTCTTACC CGTGTTTACA CGAAACGCAA AGGTAAGATT
CTGATTAGAT ACTGTAGGGA AACTGGGCAC GGTCTTCTCA TCTCGCTTTT TCGCTACTTT
AGGATCCCCT CCCGATGTGG ACGAACCAGT TGTTTTGTCA GAGATTCGAA AGGGAACAAC
AGTGAAATCG CTTTGTTCCA ACGTCTCCTC AGAATTGCTG CGCGACTTCA ATTATGCCCT
AGTGTGGGGT ACCAGCGCAA AACATGCTCC GCAACGATGT GGACTAAATC ATATTTTGGA
CGATGAAGAT GTGGTACAGA TCGTCTCGAA AACGGTGAAA CAGCAGCAGA ACGACAGAAA
TTACGCTCAG CTTGTGCAAT CGTTCGCTGA TAAGCACGCC AAGAAAAGAT TTGAAGCAAA
GAAGCACAAG CATGCGAAAC TGCGTGGCTG ATTCCCTACC ATACTCGATT GTGTCTTTCA
TATTTCTCCA GAATGCGCTG CAATTTTGGT GTTGTTGGAT TCCTTTTCTA CTTTGACCAT
TAGCAAAACT CTTAAGCCTT TTACACTAAT GCAAAGGCAT CACCCGAAAT GCGGTCCATC
AACCCCTGAT GAATCTTCCA CGAAACTTCG TAAGATTGCA AAGGGCAAAA AAGACAAATA
CTGTATGCCG TACTAGAAAA ACCTAACCTT TGTGGATTCA TGCTTCGTGA GTTGTTCGAC
TACCAAATCA AGCAAATTTA TTTCATGAAG GCAACTGCTA TATATTCTCT CTTGTATCTC
CCTTACGTTC GATCTACTCT TTCCTACTGC TAGTGCTTGT TGTTGTGTTC TTTATTTTCC
ATATCACTGG TTCTGGTTCC TCTCAAGCCT CGCTGTTTGA TCTCTTTCTC CGATGGTTAC
TGTCAACGCT TCTTCATGTG TTACATTTGA TACATTCGAT CCGTTACCTC CTATCGTAGG
ATCATTATTT TGTTTACATT ATCTCGAGAT TAGAGCTCGC TCTTTTTCAA ATCTCTAAGT
GTGTCATGTC GCTTTCTGCC CGACATGTCC CACTTGACAA CTGCTACAAC TGCATCACAC
AGCTACTACT ACTCTACTAC TGCTACTACT GCTACTACAT TGCTCCTACC ACTGCTACTA
CTATCGCTCC TAGGACAACT GGTTTTACTA GAGCTCCTAC TACTACAACT ACTACATCTA
CTCTGCGTCA TGCGTGAAAA CACAACAATT GACTTGCATT CAAACTGCTG GCGAAGTCTT
CTCTGCTTGA GAGAAGGACA TGACATTTGC TTACCCTACG AAAACCTTAA AACGTCAAAC
GCTTTGGTGC TTTTGTGTGT ACCGGGCAGT GGCTTTGGGA GTAGCGCCGT TGATTTCACG
TCTGAGTGTC TCCAGCCATA CTGGCGCAAT GTTCGTTTCT CCCAGCCGGC GTTCTGTTAG
TCGAACTAGA AGGGAGACGC CACCAGCATC GTCAGACTTG GTGTCCATTC CTTCGCTATC
AACCCCGGAA AAAAAGCGCC AGCTCCCACG AACTGAAATG GAACCCTCTG CCATTAGTCC
AGAAACATCG CCAACCAGGT TCTTGACGTC TGAGCTCGTA CGACAAACAA ATAGAAAAGA
GGCGTACGTG GAGATACGGG GTGCGTCTGC TGCTGAGCTT CGTCCATCGT CTACTTTGAC
GACTGGCCAA TGCTTTCATT GGAGAGCTGT TGAAACAGCT GCATCACTGA AGGAATCTGC
GTGGGGATCG CACAATGCAA CGGAATGGGT GGGCGTTGTG AGGGCCAGCT CTGGCCAATC
AGTCGTTCTT TCCATTCTTG AGACTCCATT CTCATCGCAT TATCGTGTGT TACATGGCCC
AGCGTCTTTT GATTATGATG ATTTCTTAAG ATCGTATTTT CAACTAGAAA TATCTCTTAC
GGCTCTATAC GACGAATGGT CTGTCCAGTG TCCCCGGTTA AAAAAGATTG CTAAATGCAT
CCCAGGGGTT CGAATCATCG ATCAAGACCC ATGGGAATGT CTCGTTAGCT TCATATGCTC
CAGTAACAAC AATATTCCTC GAATTACAAA AATATTGAAT GCCCTTCGTA AAGAGTATGG
GGAAAGATTG ATGGCTATTG GCGACGACGC ACTCTACTCA TTCCCAAGTC ATGAGAAACT
AATGGTGAAA GCGACAGAAG ATGATTTAAG AAAGAAATGC GGGATGGGAT ATCGAGCGAG
GTACCTTATG GAGACAATGC AGGTTCTTGA TTCGCTAGGA GGCGAAAAAT ATTTGCAAGA
GCTGCGTAAC ATGAACGACC CGGTCGAAGT GCAAGATAGA TTACTTCAGT TTTGTGGGGT
CGGTCGAAAA GTGGCGGATT GCGTATCTCT TTTCTCTTTG AAACAATGCA ATGCTATCCC
GGTTGATGTG CACGTCTGGA GTATTGCAAG GCGTGACTAC GATGAAGAGG GACTTTTACA
AAATGCAAAG AGCCTATCCC CAAAAATGTA TCACCAGGTG GGCAAAGTGT TTCGATCGCG
ATTCCCTCGC AAAAGTGGAT GGGCTCACTC TTTGCTTTTT GTGGCCGAGC TTCCAAGCTT
TAGGTCAGCT CTCCCCGAGA GAATGATTCA GAGTATGGAT GAGGTAAGCG GTTGTGGCAT
TATTGCATAG ATTGTATTGA ATTTACTTCA CGCTGTCTGA CTGAATGCCC AATTTTCATA
CGCCATTGAC TGTGACCATA GTTTCGTGCT CAGGAGAAAG AGCGCAAGAA GGCGAAAAGA
GAATTGAATG ACAGATAATT AGCTCTCAAT TAGATCTGAA GTACTCTTGC CGATATCTTC
CGACCAGTTT TGTAAACAAT TCCGTTTGTG GTGGCACGCT TGCTCCAACA ATTCCAACAA
CTGACGTTCC AGCCGCGCAG CCCCAAAGCA TTCCTTCAAG GATGGCAAAG TCTGGCCAGC
AAGGGTCTGT CAGGGTGCTT TTCACCATTG ATTTCCAACT CCCGGCAAGG AATCCAGCCG
CGAACGCATC TCCAGCTCCA GTTGGGTCAA CGACATCGAC AGACACGCTT TTTTTAATAT
CAACGACGGT CTTGCCACCT CGCAAGGCAA GGGCTCCATG TGAGCCTCTT GTTATAATAA
AACATGTCTC ATAGGATAGT AAAGCAGTGC AGCTTGCCCA CTGTTCAATT AACTCTTTCT
TCTTAAAAAG AAGGGCTGCC GAGTCACTGA AGTTCGTCAA AATGTTAGTC GCTTCAAGCT
CGTTTAAAAA CAAGAAGTCA AGCAAAGGGA TCACTTCTCG CAAACCTCTG TCCCAGCCAT
TGGAAGCATC GTGCTGCGTC GAAAGAGATA TTGTCGTGTT CCGTCCAGTT CTATTAGACT
GCGTATGCCT CATGTTGCGT AAACATTGCA ACTTGCTCTG GAGTACACCG TTCCAAAATT
TAGGGAGGTT GAAATAACCA GAAATGTGTA CATGTATCGG TACTTCAGCT TTCCCTATAC
CAGAGACATC CACATGCTGA GCGCTAAAAC TTTGGATGCA GCCGGAGTGT GTCATAAAAG
TCCGTTCTTT TTCGGCAATG ATAGCAATGC AATGACCTGT TGATGCGACG GACTCTTTAG
AGAAGCAGTT GACCATTCTA AAGCCGTGCG TTCTAGCGTG CCGCGAAAGA ATTCGTCCGT
ATTCGTCATC TTCGTTGAGA GCAGAATACA GACTGACCGG TGCAGGTAGG TTAGACAAAG
CGCCAGAAGC GAACTGACTG AGAAGACGAA CAAGCTGGGT TGCTGTGTTT AGAGCGGAGC
CTCCCGCATA GTGTCGTACA GGGCGCGTCA ATACAGAATC CCCACCAGGC ACTGGCCAGT
CTTTTTCTAG AAATGCGAGC AGATCAACAA ATGCATCACC TATTATATGG AACGATGGCG
ACCAGAATAT CTCCTCCATT TGAAGTTTAA AAGTTGCGAT AACAGCTGTT CCACTAGAAG
AGTGAAATTA TTACGTATTG AGCCGTCCAC TTGCTCGATG GTGTTGAGAG TCTTTTTACG
TTTCCAGTGT ATGAATAATG TCAGACGGCA GCGAAGGGGT GAGTTTTTTC TCGCATCCAA
AGAATGTTAC AACAGCAATC GACAGAAGGG GAGGGATGCT TTCTGCTTGG AATATTTCTC
CATACGTTTC AAATTACAAT CGAAGAGAAA ATCACGTTAG TGTCGATCTA CCTCATTCTA
TCTCTAAACT ATAGTTTGAG ATGGGCAATT CATGCACACC TTTAAAATTG ATCTCAAGGA
CTCCCTCATC GCTTGATCCA TGGTCATGTC CAGAAAAACA ACCAAATTAC AAGAGAGGGG
GAGCGCATAG CTCATTTAAA CTTCCGAATG CCGTCGGAAG ACAACGCCTC ACCAAGTTCC
ATGGCCTCCA CGCCCGTAGA AAGTTCTGAG AACGCTCTGG ACCTTTTCGC TCCTCCAAGT
AACTGCGTTG ACGACCAATT TGCTTCCTCG AAAAGCGATG CCATGTCTCC CGCTGAAACG
GCTATCACTT CAGTGACGAA AGGCACACAT CTTCTGGTGC CAGTGCAGCT GTCTTTAGGA
TGTGGTGCAA ATTCCCCAAA GTTGTTCAAA TGAAGAGAAA ATGAGCACAC ATATAGCACA
CACGTTACAA GGCATGTAAC GAATATTACA CAGCTGCTGT CGAAAGGAGC AGGTCTAGCA
TGTGCCATTG ACCAAGACCA TAAAGGGGCA ACGAGAATAA TTCCCATAAT TTCACCTGCC
GTGTCAAGAA ACGTAGTGAA CTTTCCACTT TCGCAATCTC GTATGAGCTG GTCCTTTACA
TAGCGCTTCG TTAGCCAGCT AGTTTCAGTA CTCGCGATGC GCGTAAAGCT ATCGGATGCA
ATCCTGTGCA GAATTGTTGA CGAAGACCGT CCTAATATTC CTGAGAGCGA CAGACACGCG
AAGATTACGA TGGTTGATGC CATTACAAAT ACTGAGTCCG TGCGCCGCAT TGGTCTGTTG
ATAGAAAGCA AGATAAGTGC ACATGCAACA ATGCGTCGCC CTGACAAAAG TTGCGCGAAA
CTAACACTTA CATCGTCCTC GCAGAGACAG TAGCGAGTAA GGCAAGCAAT ACTGACTGTG
AACCGATACC GACTCGAAAT CCTCTCATTG GTTCTCTGCT TGGAATCTGA GAAACAAGCC
TAGAAGATTT TGTCCGGAAC GCACACAAAA GTACCAAACA CGCGGAGAAT ATGGCGACAC
CGCTGCGCGA GGGAGAGTAC CCTAGACCGC CAACCCTTAC AGGAGACAGA AGCCAAAGAG
GAAGGGCAAT TTCGAGCGCA CCTTGGACAC AACCCCATAA AACATGCATA ATCGACACAA
TGGTGAAGAC ATCAATTTCT CGTCTTACAA ACTTGTTTTG GCCGACTTTG CTTCCTATTG
GCTGCGATGT TGTTCGTTGT ATAGGAACTC TCTCAACTGA ACCAACGCGC CGACGAAGAG
GGCGAGACTC TGACAGCGAT CTAGTACGTG GAGGTGAGAG TCCCAGTGGG CTCAGCTGTT
GCTCCTGAAC CAGCCCGTTA CTTGCCAGAG AAGTCTCGTT TGTAGTCAGC ACCTCTTTGC
CCCCCAATAC ACTGCATCTA TCTCCCGTTT TCGAAATCTC GTCGACCAGA GAGCAAAGTT
GGAGTTCATA CGGGTGTTCT CCGAGTTCGT AAGGACTCGT TCCTCCAAAT TCGGGAGGAA
TCTCGCTTTC GTCAATGTAT TCGCTTAAGG CGGCGGCATA TGATCTCTCT GATAAAATAT
CAACCTGAAC AGAGTCTGGT AAAATTCCTT TCACACTGGA CCAGGCACCA GACAGCCAGA
AAGGAGAGTT TATAACAAAA GCTCTCTTCA TGGTCATTGG ATAGTGAGAT GAGTTGACTT
CTCCAGCTTG CTTCAAATAC TTGATCACAT CACCACTTAA ACTTGACAGT CCAACACCTT
TGACATCCAA GACGACAATG GTACCCCACG ACGAGGAGCT GTGAGGTAGT GCTCCCGACC
CCAGCTTTGC TCTCACATCA TGTTGAGTAC ACACTCGATT TGCAATGAAC TCCATAAAAA
ATATGTAATG CTGGATCATA TCCGATATTT CACAACCACT CTGAAAAAGT TCCCTTAAAT
TCATCCGACC TGGACGCTCA TATACAATGG GGAAACCTGA CTTACTGTGC CCATGAACAT
AATGAGGATA TGCCTGTTTT ATCTTGGCGA ACCATTTGTT CGGTATCGTA TGGACCTTCC
ATACGTGCCT CTCCAAACGC CACGCTTGAG ATTTTCGCCA AGCTTTTCTG GCCTTGGAAT
CATTTCCATT GTAAAACAAT AGATAGTTTG GTGGGATTGA GGCAATACAG TCTCCGGGAG
GAACTGAGGC GGCCGAGCCA TCATTGTACA GGCATCTTCC GTTCACATAC TGAGCAATTT
CCATTTCATT CGTTGATTTT GCAGAATGTA CTTCTGCATT TTCGACATCC GAAAAAGCAG
ACTGGCAATC AAAAAATTCA TCAATGCTAT TATTCGATTC CATTCGACTT CGCATGGGAG
TTGCAAAAGT GGATTTCCGA TTTTGTTTCG TCACAGACAT ACTTAGAGGA TCAATAAAAG
CATCTTCTTC AGCTTCGTCC TCGTCATCAA TGATGAGATG CAGAGGCACG GTTGTGATAA
GTGGCTTGCT ATCTTGGTGG CTACTGGTCT TGTCGTCGCT AACAATTCGT CGGAAGACCT
TGCGTACCTT GCCAGCTGCA CCATTATTTT CCTCGACGAC GTCTGGTTTT GATGCTAATG
CAAATAGACC GCGAAGAACA ATTTCAAGGC TGACTGAGAC CCCAACAAGA AAGAGAGGCG
ACCAAGAATA TCGGGATGCA CCTGTCAGGG CACGGAAAGT CGAATCCTTC GTCGCCTTGC
GAAAGAGCAA GCCGCCGGAT AGTATTGAGA TCGCAAAGCC AGTGAGATAA ATTTTGGCCG
TCCCTGACGC CACGTCTACG TATCCCTCTC TTCTTCGTAT TCCAGCTTCG GCAGGTTCCT
CCCTGTCTAT TTCTACTGCC TTTCGATAGG TCCACACGTC TTCTGGTAGT GCAATATGAT
TTGTAAAGCC ACACAGCAAA CCTGCGAGGG TGGCTGATAG GAATCGAATG GCTACGAGCC
ATCTTACTGA CGCCAAGCCA GCTCCGTAA
|
|---|
| Protein sequence | MGVMEKIKEI EAEMARTQKN KATNSHLGLL KAKLARLRNE LFVEQSGGGG GGGEGFDVAR
NGDARIALIG FPSVGKSSLL NSLTTTESEA AGYEFTTLTC IPGVLRYKGS KMQVLDLPGI
IEGAAHGAGR GREVIAVARS ADAILIVLDA GKEGLQKHRE ILERELETVG IRLNQRAPDV
TLTKRKAGGG VRFASTVPQP LLGVEPEKLV TQILREYRIT SADILAREEI TVDQLVDVIQ
GNREYKPCLY LYNKIDTVTV EEVDQLARMP YSIVGSVAQG FNISGPFEDD RLKQMMWDYL
GLTRVYTKRK GSPPDVDEPV VLSEIRKGTT VKSLCSNVSS ELLRDFNYAL VWGTSAKHAP
QRCGLNHILD DEDVVQIVSK TPHSKPARVA DRNRMATSHL TDAKPAP
|
|---|
| |