| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49926 |
|---|
| Symbol | |
|---|
| ID | 7198624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011693 |
|---|
| Strand | - |
|---|
| Start bp | 315311 |
|---|
| End bp | 317315 |
|---|
| Gene Length | 2005 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002184778 |
|---|
| Protein GI | 219129190 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CACGACATCA TCGAACGCAA GAGAACGTCC GGGAAAGCCC TTCACCAGAA GACATTACTC
TTTTACAGCA ACGAAACGAC AAAACACTCC GTGACTACAT TCGTTTGTAA GAAAAAACAA
CGATTGATAG GAACTGACTT TACTGTTTGG AGAGATGTTG CCGTCGGATC TCCATCGGCA
TCCACCGCTC CTCTGGTCAC GTCGGCGATT AGCCCCACTC TACCTAGTCC TGGGGTACCT
GATCGGCGAG TTATCCAAGC CCGTGACGGG ATTTGCCGCT CCTCTGCCTC GATCGTCGTC
CATACGGCCT TTCTTACACG CTCAAAGCAG TAGAACTACT ACTACCTCCC AGGCTGCCTT
TGCACCCTCG TCCTCATCGC CACAGAGCAC TCCTAGTCAG CAGCATACGC AAAAGAGCCG
CAGCAGTAGA AAGCCCTTGT TCTATCGCAA TCGAGCTATC CATGAAGATC AGTATTCTTC
CGACTCTACG GTGTCCCGCC CGGAAGCTGC CAACACTCTT TCCCGGACAA CATCTAGATA
TAGCGGTATG AACCTACCCA TGATTCGAAA TCTGTGCTTG TCCCAAGCAG CCTTGCTAGC
CTTCTCTACC GCCATTGCTT TGGTCTGTGG AGTGGACTTG ATCGTTGACA GTGGAATCTC
TCTGCCCCTT TGGACCGCTA CGGATGGCAC CGTTGCCTTG CTTCCCGAGA ATCCCTGGCT
TTGGGGGGTT GTCGCCGCCG TTCCCATGAT TCTTTTGGGT CATAAAGTCG AATCTTCCGA
TGCACGCGCC GCCAGTTACG TCAATTTTTC TACACACAAC ATGGTGGTCA CACTCTTTGG
ACGCCGTCGG CGACTGGATG TATCGAACAG CCTATTGGAG TGTCAGGGCA CGTCAATTAC
TCACCCCACA ACGAGTACCG CGGATGTGCT TTGTCAGAGT CTGGTTCTGA CGCTACTCAC
CAGTATCACC GAAGAAGTCG TCTTTCGACT TTGGATTCCG TTGGCTTTGG TGTCCTTAAC
TCATTCCGTT CCACTGGCCT TGATTGGTCA AGCGTTCTTG TTTGGTCTAT GCCATACACA
CCACCAATCC AAAGCTGGAG AAAATGTTCT CATCGGCAGC TTGCAAGCTC TCAACGGCCT
TTGGTACGGT GCCCTGTACG TGCTGGCCGG TGGAAGTCTA CTTCCCGGTA TGGTCGCCCA
TATTCTGTAC GATTGGCACG TGTTGGTGGA AACTTGGCAC GTGGTCAATG AGCAGTTGGA
CTGGGCCGAA AAATCTCACC CACTAAGTCC TCAGGAAGCG TCCGAAATTC GTGCTTTGCA
ACAACAAGCC GGTTCCGCGC TGACGAACGA AACTCTTCTG TTTGGTCGGC GTTTCTTTTA
CGCCTTTGAT CGATCTCAGC AAGAAACGTT GTCGCTGGCC GACACTCAAC GGGCCATTAC
CTACGCGTTC ACAGGCGGTG CGAACCCGCT ACCGACACCG TCGACGTCGG AGGTGGAAAG
CATCGTCCGG CAAATCTGGC TGCATCGGGA AATTCTCCGC TCGGAGGAGC GCGTGACACT
ACCAGAATTT CTACGTGTCC TCTTTACCTT GCGAGCGCAC GCATTGGAAC AAGTGAGGAA
AGGGCAAGGA CATGAGGGGA CGGAGTTGGT TTAGTGTCTA TGTAGCATTC AATTGCCATC
TTCATTTCCT TGCGAGTGTC CCGCCATGCT GCACGGAACA CATTTTTTAC ACATAGATGC
TAATCCTTTT CCGAGAACCT AAATTCCTGC AACACTCATC ACTACATTTG CGCTCAAGAA
ACATTGTTCG GTATATCCCA GCGGAAGCTT ACATGTAGAC AACTTCATCG GGTGTTACCG
CAAGTGCCTA TGCTCCTCAA CCTGCACTTG TGTTGCATCC TGCAACACAT TGACTGCATT
GGGTGCCTCA CAATCTTTGC TGAAGGCAGG GTAGTCCTTG TCTTCAATCC ATGCCCGCAT
AAAAGTAAAC GTCGCAGCGG CCTTG
|
|---|
| Protein sequence | MLPSDLHRHP PLLWSRRRLA PLYLVLGYLI GELSKPVTGF AAPLPRSSSI RPFLHAQSSR
TTTTSQAAFA PSSSSPQSTP SQQHTQKSRS SRKPLFYRNR AIHEDQYSSD STVSRPEAAN
TLSRTTSRYS GMNLPMIRNL CLSQAALLAF STAIALVCGV DLIVDSGISL PLWTATDGTV
ALLPENPWLW GVVAAVPMIL LGHKVESSDA RAASYVNFST HNMVVTLFGR RRRLDVSNSL
LECQGTSITH PTTSTADVLC QSLVLTLLTS ITEEVVFRLW IPLALVSLTH SVPLALIGQA
FLFGLCHTHH QSKAGENVLI GSLQALNGLW YGALYVLAGG SLLPGMVAHI LYDWHVLVET
WHVVNEQLDW AEKSHPLSPQ EASEIRALQQ QAGSALTNET LLFGRRFFYA FDRSQQETLS
LADTQRAITY AFTGGANPLP TPSTSEVESI VRQIWLHREI LRSEERVTLP EFLRVLFTLR
AHALEQVRKG QGHEGTELV
|
|---|
| |