| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48794 |
|---|
| Symbol | |
|---|
| ID | 7195062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011687 |
|---|
| Strand | - |
|---|
| Start bp | 257888 |
|---|
| End bp | 259531 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183451 |
|---|
| Protein GI | 219126410 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | AGTGATCGAA TCTAATTGGA ACCAACGACT GGCAATCAAA GTTGTCTTTC ATCTACTTAC
AATAGTTTCA TGACGGAGAA TGGTCACACA ATAGATGAGG TCTCGCCTTT GTTGGGGAAT
CGACCACAGG AATATAGTAC AGGTAATCAG CAGCAGTTCC CCGAGACAGG GAATGGAGAA
ATGGCCGAAC GATCCGACGT CGATTCTCGC CGCCACTTCC TTCGCAAACT TTCCAACCAC
TGGATTCCGA GCCCATGGGA TGTGACGTCT GTTGTTTCCG AGCCCATCCT GAAAAGCCCA
GGCCATCCTA CTACACGAAC AGCAAAGTCG CATCACAAGT CTTACAGCCG CCAAGCTCGT
TCTTTAAAAC GCCGTGTGTT TTTGTGCTTG ACCGAACCCG ACACGTCCAT CGCCAGCGCC
GTATTTTTCT TCGTACTCGT CATCAGCATC ACGTTAATGA ATGTTGTCAT GATGATGCAA
ACCATGCAAG CTTTCCAGTT CACGCCAACG GACTGTCGAA CGTGTGGAGG TCCGGTAACG
TACCTATTCG ACGACGACAA TTTCATCGCC ATGCCCGACA CCGGAGCGGT GGTGGAATGT
GTCTGTCCCC CGACGCCACT GGGTTGGACC GTGACTGTCC TCAATGCAAT GGTCTACTTT
TTCACGTTGG AATGGACGCT GCGGGTGTTG ACGTTCGAGC CGCCCCTGAA TGAAAAAGCC
CCGCACGGTT GGGGCTTTGT CTTGCAGTGG TTAGGACACC TCACTTCCAC CAGCACTATG
ATGGATGCCC TGGCTATCTT TCCGTACTAT ATGGAACTGA CTTTTGAAAC GAACGGCCTC
ATGAGTTTGC GCCTATTGCG TCTCTTCCGG GTCTTTCAAT TGGTCCGTCT GGGTCAATAC
AACTCGACGT TTACGTCTCT GATTAACGTT TTGTCGCAAA GCTTGCTCTA CCTTAAGCTA
CTGTTGGGAG TGCTGCTCTT TGGGGCCGCG TTTTTTGGTA GTATGCTGTA CTGGCTGGAA
AAGGGCGACT GGGAGTACTT CGAAGGGGCA CAGTCTTACC AATTTGTTCG CTACGACCGC
AATCACGAGC CAGAAGTGTC GCCGTTTACA AGCATCCCGG AAACGTTTTG GTGGTTCCTT
GTCACAGCCA CATCGGTGGG CTACGGTGAC ACCGTACCGA CCACAACAGC CGGAAAGTGG
GTCGGCGTAT TCGCCATGCT GACGAGTGTC CTAGTCATTG CCTTTCCCGT ATCAGTGTTC
TCCGAACTCT GGCAAAAGGA ATTGCGAAAA ACTGGGGCTC TCCAGGCGCT CGAAGAAGAT
GACGATGATG ACGACGAAGA AGATTTGGAT CCGATGACGC TTGCCAGCTC GAGAGCAAAC
ACATTTTCGG ATAGCGACAT TAAGCTGTCG GTCATTCCCG AAACGTATCC TCCTCCAGAG
TACCGCCGAC AGCCCCAAGG TAGTTTGGAA TCAATGGATA ACGAAAGCTC ATCTTCGTTA
TTTTGTGACA ACGGCGATTA TGTTCGTATC CACAAGGACG ATTTGGCCGA TTTGCTCTCC
CATGTTCAAA GTATTCGGGA AAGTCAGCGC CAAATTCGCA CTTTGATGCG CAAATATAGT
CCGAAGACGG CAACCAGGCG ATAG
|
|---|
| Protein sequence | MTENGHTIDE VSPLLGNRPQ EYSTGNQQQF PETGNGEMAE RSDVDSRRHF LRKLSNHWIP
SPWDVTSVVS EPILKSPGHP TTRTAKSHHK SYSRQARSLK RRVFLCLTEP DTSIASAVFF
FVLVISITLM NVVMMMQTMQ AFQFTPTDCR TCGGPVTYLF DDDNFIAMPD TGAVVECVCP
PTPLGWTVTV LNAMVYFFTL EWTLRVLTFE PPLNEKAPHG WGFVLQWLGH LTSTSTMMDA
LAIFPYYMEL TFETNGLMSL RLLRLFRVFQ LVRLGQYNST FTSLINVLSQ SLLYLKLLLG
VLLFGAAFFG SMLYWLEKGD WEYFEGAQSY QFVRYDRNHE PEVSPFTSIP ETFWWFLVTA
TSVGYGDTVP TTTAGKWVGV FAMLTSVLVI AFPVSVFSEL WQKELRKTGA LQALEEDDDD
DDEEDLDPMT LASSRANTFS DSDIKLSVIP ETYPPPEYRR QPQGSLESMD NESSSSLFCD
NGDYVRIHKD DLADLLSHVQ SIRESQRQIR TLMRKYSPKT ATRR
|
|---|
| |