| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_48647 |
|---|
| Symbol | |
|---|
| ID | 7194894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011686 |
|---|
| Strand | + |
|---|
| Start bp | 474007 |
|---|
| End bp | 475917 |
|---|
| Gene Length | 1911 bp |
|---|
| Protein Length | 636 aa |
|---|
| Translation table | |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002183104 |
|---|
| Protein GI | 219125683 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.453623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGACG TTTCCCTTCG GTACTTGATC ACCGATCCGG ACACGTGGCG CGGTACGTTT
TGGTGCCTCA TGGGTCTCAT CCTGGCGCGT GTCACGGCGA GTGCGGCGGT GGAAGCCTAC
CGCCGCGTCC AACTCGCACG CCATCTCCAG GCCTATCCCT ACGCACGCGT CGTCCCGCTC
CGGACTCGCG GCGCGGCACC GCACCACCAC ACAATCGTCC ATCGTATCCT CTGGTGGATG
CTGGAATTCG TCGGGGCTAT TCTACGCGTG ATTGCGGCCG GATGTATGGT ACTGTGGCGC
GCCGGGCAGC GTGCCTGGCG GCGGCAGGGG AGCAGGCGCC CCCACGGCCC CGTCGTTCCC
ACGGCTGTCG TCCCTCCCTC CGTCTTGAAA TCGAAACAAT CACGAAGCCG TAGTGAACGA
CCGTCGGTAC GGAGTCAGTC CGTTCTCTTT GCCCAACACA CCAACGGAGT CGTCAAGACG
ACCGAGTACT ATTACAATCC CCGAGCCACG CCGAATCAGC GCGTCCCGGC CCAACCATCC
ATCACGCCAC CGCGGCACGA ACTTCCAGTG GAACACCGGG AACCGACCCC GGGGAGTCCG
GAAGCAACAA ATGCCCTCCG CTCCGTCTTT CCTTCGTCCA CTGCCAGCAG CACTACCACC
ACGTCCATCA TGGAACACTC CCCGAGTCGA CACCATATCA AGGCGGCTCT ACCACTTTCC
GAACAATGGC GCAAACGCCG TCTCGCTGGC GAAGATGCCC TTTTGCCGGC GTTGAAACGA
GTTGTTGGTC ACGGGGGTGG GATCACCGTG GGGGTCAGTC CGACGCGGGG ACGCCTCGGG
GCTTCGCGAT CGTCGCGAGC CGTGCCGACC CCCCTCTCGG ACAAGGTCCG TCACGCCCGC
GAAGCGCGCA TTTGGGAAAG TTTGAATCGG AAACGGCCCG TTCCGGACGC GAACGATACC
CAAGGTCGGG CTGCCAAAAA GGTGGCCTTC GGACCCACGA TGCCTACCGC TATTGCACCG
TTGGCAGCGG AACCCACCCC GGCCCCCCGG TCCAGTATTT CGTTCGGTAC ATCACTGACT
GACGTCACCC CAAAGCCAGA CGCGGCCCCC ACTACTGCGG CACCGCAACC GGCGTTCGTA
TTTGGATCCA CATCGGATAC AACACCCGCA CCCGGTCCGA CAACGGCGTC ACAGCCGGCC
TTTGCTTTTG GATCCACATC GGATACAACA CCCGCACCCG GTCCGACGAC GGCGTCACAG
CCGGCCTTTG CTTTTGGATC CACATCAGAA ACAACACCCG CACACGGTCC GACGACGGCG
TCGCAGCCGG TGTTTGCTTT TGGATCCACA CCGGGCACAA CGCCCGCAAT TGGTCCAACG
ACGGCGTCGC AGCCCGCGTT TGTATTTGGA TCCACACCGG GCACAACGCC CGCACCTGGT
CCGACTACGG CCCCGCAACC GGCGTTCGTA TTTGGATCCA CACCGGGCAC AACGCCCGCA
CCCGGTCCGA CTACGGCCCC GCAACCGGCG TTCGTATTTG GATCCACACC GGGCACAACG
CCCGCACCTG GTCCGATTAC GGCGTCACAA CCGGCGTTCG CCTTTGGATC CACGCCCGCG
CCGACATCAT CGCCCGCACC TGGTCCGATT ACGGCGTCAC AACCGGCGTT CGCCTTTGGA
TCCACGCCCG CGCCGACATC ATCGCCGTTA CCAACCACAA CGTCGGTACC GCCGACGTTT
GCCTTTGGAT CGGCCGTAGC CGATACCACT GCTGCTCCTG TCACTGGCTT TGGAGCGACT
GCTAGCTTTG GTGCACCGGC ACCAGTGAGT GGTGTATCGT TTGGGAGTAG TACTCCCACC
GCGGGAGGAG CGAGTGCCCG GCGTCGTGCC GCACGCCGCG GACGCCGGTA A
|
|---|
| Protein sequence | MPDVSLRYLI TDPDTWRGTF WCLMGLILAR VTASAAVEAY RRVQLARHLQ AYPYARVVPL
RTRGAAPHHH TIVHRILWWM LEFVGAILRV IAAGCMVLWR AGQRAWRRQG SRRPHGPVVP
TAVVPPSVLK SKQSRSRSER PSVRSQSVLF AQHTNGVVKT TEYYYNPRAT PNQRVPAQPS
ITPPRHELPV EHREPTPGSP EATNALRSVF PSSTASSTTT TSIMEHSPSR HHIKAALPLS
EQWRKRRLAG EDALLPALKR VVGHGGGITV GVSPTRGRLG ASRSSRAVPT PLSDKVRHAR
EARIWESLNR KRPVPDANDT QGRAAKKVAF GPTMPTAIAP LAAEPTPAPR SSISFGTSLT
DVTPKPDAAP TTAAPQPAFV FGSTSDTTPA PGPTTASQPA FAFGSTSDTT PAPGPTTASQ
PAFAFGSTSE TTPAHGPTTA SQPVFAFGST PGTTPAIGPT TASQPAFVFG STPGTTPAPG
PTTAPQPAFV FGSTPGTTPA PGPTTAPQPA FVFGSTPGTT PAPGPITASQ PAFAFGSTPA
PTSSPAPGPI TASQPAFAFG STPAPTSSPL PTTTSVPPTF AFGSAVADTT AAPVTGFGAT
ASFGAPAPVS GVSFGSSTPT AGGASARRRA ARRGRR
|
|---|
| |