Gene PHATRDRAFT_48029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_48029 
Symbol 
ID7203246 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011683 
Strand
Start bp761869 
End bp763148 
Gene Length1280 bp 
Protein Length315 aa 
Translation table 
GC content50% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002182295 
Protein GI219123986 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CGATGCTTGA CGGTGAAGAG CTTCTACAGT TAACCCCTCC CTTTTCTTCT TATTCCTCAT 
AGACTTTGAG GGGGTAGAGA TAGAGAACGG TCATCACCTT TCTGGCTGCC TATTTGAAAC
ATCGCCATCT ACTCTCGCCA GTTCGTGAGT TCTCTTGGAG ACAATCCCGT CCTCTGGTTA
TTCCCAACCG ACGAATCACG CCATTCTTTT CATAAATGAG CGAGACTTCG CGAAAGCGCA
CGTTTGGCAC ACTGGTCACG AAAAAGAGTG CTTCGGCAAT AGTAGTGTTC GTCTGTCTAC
TGATATCGTC GTTTCAGGGT TCGCTTGGAT ATTCGCTTCC CAGAACTCCC AGATCAATAT
CCGAGAAAGG CTTTACTGTT AGACCACGAA GTTGGACGCC GACGAAAGTC CAGAATAATG
CACACACACG ACAAAACTAC AATTTGGTGA GTGGTCTTAA AAAAGATCCA ACTCGTAAAG
GATACTATGC CGGTTTGGAG AATGAACACG CAAGAACGTC AACTGCACTC TTCCAGAGGA
ATGCTCTTCC CGAAGAAGGC GACGAAGGTC CGTCATCGCT ACCACAGCAA GATGACCTCT
TTGACGGCCG TACCACTCTA ATTCTTGTGG GAGGACAATC GCTGCTGATT GTGGCAGCTG
CGATCGCCGC TGCAATTCTG CAAACGCCTA ACTGGGGATT CGGTCCCAAC ATTGTGTTCG
ATTTAAAGTC GATTGGAGGT GGATTTCTGT TGGCACTTCC ACTCGGCGGT CTTGCGGCAG
CGCTGGATTT GATCGAAGAC CGCTTTCCGG CCTTGCAAGA CGTAACCAAA GCTACTCAAA
GAAGCATCTT GGCACTCATG GGCGGCACAT TTAAGCCACT TTTTGCCTTT TTCACCGCAT
TGGCATTGGG ATTGGCGGCT GGATTCGGTG AAGAAATGCT CTTTCGTGGC ATCTTACAAT
ACGAACTAGC GAATCGCTTT GGACCCGTGC TGGCTGTGGG TGCCGCCAGT ATCGTGTTTG
GTGCCTTACA CGCGGTGACG CCCCTTTACG CGTTCTTGGC GACACTAGCG AGCGTGTATT
TCGGTGCCAT CTATCTCGCG TTTGACAATT TGGCCGTGCC GATCTGGTGT CACACCATTT
ACGATGTTGG CGCTCTTTAT TACGCCCACT GGACAGTTTG TCAGCTCACC CAACAAGAGC
GGAACGAAAT TGCGTTTTGG GAAGGTCCGG GGAAATAAAG AAGATGCCGA GTACTTCCGT
AATAGAGATT GTTGAAAGCT
 
Protein sequence
MSETSRKRTF GTLVTKKSAS AIVVVRLDIR FPELPDQYPR KALLLDHEVG RRRNGLKKDP 
TRKGYYAGLE NEHARTSTAL FQRNALPEEG DEGPSSLPQQ DDLFDGRTTL ILVGGQSLLI
VAAAIAAAIL QTPNWGFGPN IVFDLKSIGG GFLLALPLGG LAAALDLIED RFPALQDVTK
ATQRSILALM GGTFKPLFAF FTALALGLAA GFGEEMLFRG ILQYELANRF GPVLAVGAAS
IVFGALHAVT PLYAFLATLA SVYFGAIYLA FDNLAVPIWC HTIYDVGALY YAHWTVCQLT
QQERNEIAFW EGPGK