Gene PHATRDRAFT_47544 details

Gene Information

• Locus tag: PHATRDRAFT_47544
• ID: 7202781
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011682
• Strand: -
• Start bp: 70783
• End bp: 73859
• Gene Length: 3077 bp
• Protein Length: 935 aa
• GC content: 52%
• Product: predicted protein
• Protein accession: XP_002181993
• Protein GI: 219123358

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TCACCTTTCC CTTTCCCATC GCGTCCCCCA TTGTCATTCG ATATAGACTC GTGGCCGAAA 
CGAGCGAGAA TCATCCTAGT CATAAGAGAG AGCGCGAGCA ATTGCGGTAA GAAGCTATTG 
TAGAGGGGGA AGTGAACCCA ACCTTTGTTT CGATTCACAC GTCCAAGCCG AGCAAAAAGC 
TAGACCTAGG CTTACGGCAA TTATCTTTTC CCGACTTTTT TTCAAAAGGA CCACTATCAT 
GCGTATGCAA GTGCTTTTGC TCGTGAGCGC CATTAGTGGA ACAGCGGCTA GGCTCGGTGG 
AATCGCACCG ACGTCTATAC AGGAGAGTGC GACCGCTTCG GTTTCGACGG CCAGAACATC 
CGGCATTCGT TCGCACTATC CCATCAAGCA ACGTCGTGAG CTCGAAACGG AGCAGCTTTC 
GTGGGCCGAC TTCGAGGAGT GGCGCATCAG CTACTCAGAA GATAGTCGAC CCAAAGTCCT 
GCCTGCTTTT TACGTCGATT TGTTCGAGAC TAGTGGTGAC TTGTCGGCGG ATTCTCTTGC 
CCTCTACGAG ACCGCTATGG AGCAATTTCT GACCGCCGAG CTGGGTGCCG TCTACAATGA 
ACGCCCTCGC GTTGCAAGTG TTCGTGCCAA AGTGCTTTCC CAACGCGTCC TTTCACAGTC 
CGTCACGCGC CAACGCCGTC TTGACGACAC TCTTGGTGAT GGTGGTACCA CCGGAACAGA 
CGGTGTCATG ATAGGGACGC AGTTCGAAAC GCAAGTTAAC GTGACTTTTG TCAATGATCC 
ATCACCCAGT GTGTACGCCA TGCGTACCCT CATAAGTAGT ATCATGGATC GCGACATGTC 
AGGCTTTGTT GGAAATCTAT CGGCTGCCGC GGGCGACGAT CCCGCTCTTA CCCCTACTGA 
GGCTAGGTAC CGTGGCGCAG AGGGGGATGG TGTCAGCATC ACAACCGACG ATCTCGTTGG 
AGGATCTGAC CGGGATGACG ATATCACCGA TGACGGTGTT GCTGGGATCA TTGATGGTGG 
TAACAGGCCG GTCGAGGAGG ATGATCCGAA TCTCACTTTT ATTGTTCCGA TTCTCGCTGC 
CGCTTGCATC CTCATTGCGC TCTTGGCGCT ACTGGTGACC CGTCGTAGAA AGCAAAACAG 
CAGCACGCAT CTAGATGCCG TTGATGATGA CATGGATATT TACACCGTGG ATGGGAGGGA 
TGTTTTCAGC GAGGAAGACG TTGTCAGTCC CAAAGAACAC AATCGTGAAA CCGAAACAAA 
GGTTGCACCT TCGTCTCCCG TGCTAGATTC TACACAAGGC GACAAGGGGG CTCTGGAAGA 
CGGCGACGAC GTCTTTGCTG ATTTGCCAGA CTCTCCCCAT CGCCAAACCG GGTTCGGATC 
CGTCTTTTCT TTCTGGTCAA ATTTTTCAAG GGCCTCTACT ATATTGGCTT CGAATCGTAA 
CAAGCCCGCC AAAGATTCGG AAGGGTCCTC TAAGGAGGCT GCCGCGATTG GTACTACGGC 
AGGTGTTGGA GCCATTGTCG TTGCAAGATC CAGCCGTCGG CAAAGATCGC CGGAGAACAC 
TCCAGGCTCG CACATGTCTT CGCTCTATAC ATCTGATGAG GAGGACGGAG TTCCAGACAC 
GTCTGGGAGC GATATAAATT CGACGTTTGA AACGAATGCC ACTACCGACT CCGTTCTTAT 
GTCCCCCCAA TTTGAGAAAA AGCGTTCTTT CGAAGAGCCC TCCTTCCACA AATCCCAGAT 
TCAGGCACCA ACAGCTATAG AAACGACCAA GGAAGTTGAT TCCACTCAGT TTGTATCCCA 
AGTTCTAAAG CAGACGCAAG ATGTCTCTGT CGCGCCTCAA GACGAGGACT CGGCGAAGGC 
GTCTTCGCTT GCTTTGGGCC TTGTCGGCGC GACGGCTCTT TCCGAGTCCC CAGATGTTGA 
GGTCCTTTCA CCTGAAGCTG CTGCAAACGA TCCAGCCGAC GAGAAAAGCA ATCAGGTCCC 
ACTCGGAGGG GCGGCGGTCG TCCTCTCTGC TGCCGATCAC GAGTCCGTCA AGTCAAGACC 
TCAAGAGGAT CAACCAGGAA GTCCTAGAGC AAACAAACGG AACTCAGTGA AATTGGAGTG 
GGACAGTCCA GAAAGAAGTA GCAAAAACAT GGCGATAGCT AAATCCAATG TCGAAAAATT 
CTCTCCGAAA GCAGCTAGAA GCTCTGGCGG TCCTTCACTC ACCTCGACTC CCCGACGAAG 
TGGGCGGCGG CATGCTAAAT CCACAACGGG AGATGGCACT ATGGATTATC AGGCACAGAC 
GATGAATGCT GGAGAAGCCC AGACTTCTTT TGACGTTTCA CTTAGCGATA CAGAAACACA 
TGGTCCTTCC GAAAGCCACG GAATCACTCG CAGCCTGTTT TTCAATACCT CCAAGATTAA 
GAGTCCGAAA TCACCCAGCG AGGCACATAA CGTTGCGAGC CCATCTTCAC CAGCTTCTAT 
GAGCTCCTTG GGATCCCGTA ACAGCGTCTC CGTGAAATCC GGGGCATCGG AGCAGTCCGC 
TAGTCGCAAA GTGATAGCGG ATTTGGTCTG GCTGGAAAAG AAGATTGCGG ATGCTAGTCG 
TAGAATTGCT ACATCACCAC AGTCAACGAA CGCCCCTGGC AAACCTAAAA CGTCTGCCAT 
AGACCAGTCT AGCGATTCAC TTTCCTTTGC ATCTAAGGAA GGAGTAGTTT CTGCCTCCAC 
TTCATGCGAT TCAACCTTTG AAGTTGGTTC TCCCCAGAGC GGTTCCGGGA TGCCTCAAGC 
CGAGGAGCTC ATTGTATGCC GCGACTGCTT TGCACCTCCG GGTAAACTTA AGATAATCAT 
CCATTCCACC AAAGATGGAC CGGCAGTTCA CACGGTTAAA GACGGCAGCA GTCTCACGGG 
TCACGTGTTC GCCGGAGACC TGATCATCAG CGTCGACGAT ATCGACACGA GGTCATTTAC 
GGCGGAGCAA GTTATGAAGA TGATGACAAG CAGGACCAAA TTTGAACGAA AGATTACCGT 
ATTGCATTTC GAAGCTGCCG TGGCGAAGCA GGAAGTAACG CTGTGAAGAA ATTTATTAGG 
GACAGGTTAT ATTTCGT 

 

Protein sequence

MRMQVLLLVS AISGTAARLG GIAPTSIQES ATASVSTART SGIRSHYPIK QRRELETEQL 
SWADFEEWRI SYSEDSRPKV LPAFYVDLFE TSGDLSADSL ALYETAMEQF LTAELGAVYN 
ERPRVASVRA KVLSQRVLSQ SVTRQRRLDD TLGDGGTTGT DGVMIGTQFE TQVNVTFVND 
PSPSVYAMRT LISSIMDRDM SGFVGNLSAA AGDDPALTPT EARYRGAEGD GVSITTDDLV 
GGSDRDDDIT DDGVAGIIDG GNRPVEEDDP NLTFIVPILA AACILIALLA LLVTRRRKQN 
SSTHLDAVDD DMDIYTVDGR DVFSEEDVVS PKEHNRETET KVAPSSPVLD STQGDKGALE 
DGDDVFADLP DSPHRQTGFG SVFSFWSNFS RASTILASNR NKPAKDSEGS SKEAAAIGTT 
AGVGAIVVAR SSRRQRSPEN TPGSHMSSLY TSDEEDGVPD TSGSDINSTF ETNATTDSVL 
MSPQFEKKRS FEEPSFHKSQ IQAPTAIETT KEVDSTQFVS QVLKQTQDVS VAPQDEDSAK 
ASSLALGLVG ATALSESPDV EVLSPEAAAN DPADEKSNQV PLGGAAVVLS AADHESVKSR 
PQEDQPGSPR ANKRNSVKLE WDSPERSSKN MAIAKSNVEK FSPKAARSSG GPSLTSTPRR 
SGRRHAKSTT GDGTMDYQAQ TMNAGEAQTS FDVSLSDTET HGPSESHGIT RSLFFNTSKI 
KSPKSPSEAH NVASPSSPAS MSSLGSRNSV SVKSGASEQS ASRKVIADLV WLEKKIADAS 
RRIATSPQST NAPGKPKTSA IDQSSDSLSF ASKEGVVSAS TSCDSTFEVG SPQSGSGMPQ 
AEELIVCRDC FAPPGKLKII IHSTKDGPAV HTVKDGSSLT GHVFAGDLII SVDDIDTRSF 
TAEQVMKMMT SRTKFERKIT VLHFEAAVAK QEVTL