Gene PHATRDRAFT_47388 details

Gene Information

• Locus tag: PHATRDRAFT_47388
• ID: 7202533
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011681
• Strand: +
• Start bp: 495490
• End bp: 498993
• Gene Length: 3504 bp
• Protein Length: 1057 aa
• GC content: 55%
• Product: predicted protein
• Protein accession: XP_002181570
• Protein GI: 219122476

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.911661
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGAAGACTGC TCCTTGTCTC TCGACTGTTG TGTTGTGTGT AGTAGACGAG TGCGTGCGTG 
AGTCGCGAAG CGAACGGAAC GGAACTTTCC AACGGGAACT CGCGTGGGAG AAAGAGTTGG 
AAACAGCGTC GTACACCAGA CCAAACGGTA GATTCGACCC AACCGACGGG ATTGTCAACA 
GACATGTCGA AAAAGTTCTT TCGCCCGCCG CCACAGGCTA TGGATGACTC GGATTCGGAA 
GAAGACGAGG AAGAACTCTT GGACGATGAC GCCGAAGTAG ACGACGAAGA CGTCACCGAG 
GTGTCTCCAC CCAACAAATC CAAACCGACC AACAATGCCA ATCTTAGCGA GTCGGACGAT 
GACGACGACG AGCCAGACGA ACGACCCCCG AAACGCAAAG GTCGCCACAT CGATAACAAC 
GGCAATGCGG ACGCTCGCTC TTCCAACAAA CGTGCCAAAC CCACTTCGTT CTTCGAACTC 
GAAGCCGAGG CCTCCGACAG CGAAGACGAC GACGCCGATG ACGCCGCCAA GCAACTGCAC 
AAGGACAGTG AACAAATGGA CGAAGAAGCC AGGGAAATCA TTCGTCAACA AGACCGGCGC 
CGTGCCCAGG CCGGTGGTCG CTTCGACCGA TCCGTGGCCG AAATATCCGC CGATATCGAA 
AACCGGCACC GTGCGCAACG TCGCGTTGTC GACCGTCACC GGATTCGCGA GCCAGCATTT 
GCTCCTCCTC CTCCTTCCAA ACAAAAGTCT CTGCCACGTC CCGGTAATAA GGTACGTTCC 
CAGCGTCCGC CGATGGACCG GGACGACGAA GACGACTTTG ACGACGGTGG GGCACCGCCA 
GACGCTACCC CCGAAGGCTA CACCGCCGTG GCGCAGCAGT CCCTCGTCCC CTCCGTTTCG 
GATCCATCCA TGTGGATGGT CTCTTGTGCC AACGGCAAGG AACACGAACT CGTTTGTCAA 
ATCATGAACA AGTGTGTCGC TATGGCCCGT CAAGGACGAC CGGTCGGTAT TAGCTCCGCG 
ATTGCCGCAC AGTCCAAGGG TAAGATATAC TTGGAGAGTT TTAGCGAACC GGCCGTGGTG 
GACGCCATCC AAGGAGTCCG CGGCTTGCTA CAGTACACGA TGCGGCTCGT ACCAATCGGT 
GACATGACGA CCGTCATGAC CGTCACGTCA CGCAAGAAAC CCGTACAAAA GAACGAATGG 
GTCCGCATGA CCCGCGGACA CTACAAGCAC GACCTCGCCC TCGTCAAGGA CGTTAAGGAA 
AGCGGACTCA AGTGCGTTGT GCAGTGTGTC CCGCGACTGG ACCTTACTCT GGCAGATCTA 
CCGCCCGCTG AAGCCCGCAT GCGACGTAAA ACCGTGCGTC CGCCGCAAAA ATTCTTCAAC 
CCGCAAGAAA TCGCGGCGTT GGGACGACAC GGACTGACCC GCCAACGCTT TCCCGGCCTG 
AACCTGTACT GTGACTACTT TGACGGGAAC TACTATCACG ACGGGTACCT CCTCAAGGAA 
ATGACGGTGG GATCCATGAT CAAAGCCTGT ACGGACGAGG ATCCGCCGAC GTTGGATGAA 
CTGCAACGGT TTCAGCGGCG TCAATCCAAG CAGAATGAGG AAGACGGTGG CGACGAGAAT 
GAAGGATCCA AAATGGCCGC ATCGTTGTTG GACGAGCTGT CCGACTTGCA AGGACGGACG 
GGGCTTGGTA AAACAAAGAC TGGCGGCGGT GGGGGTCTAT TGATAGGTGA TACTATTGAA 
GTGATCGAAG GCGATTTAAT TGGCATGCGT GGAAAGTTGG TGAGCTTGGA CGGTACCACC 
GTCAAGGTCA AACCCATCAA CGCCAACGTC GATTTGGGTG GAACGGACGA AATTGAGTTC 
TTGGGTAATC AGTTGCGCAA GTACATTCCG GTCGGAGCTC ACGTCAAGGT GACGGATGGA 
CGGTACGCCA ACGAGACGGG CGTTGTGGTG GCCGTCGAGC AACTCGATGG CGAAACGGAC 
TTCACCGCGG TTGTATTGAC CGACGTGACC AACAAGGAAA TCTCGGTCCG CACGTCTCAG 
TTACGAGAAT CCGCTGAAGT TGCGTCTGGT CAAGACAAGC TACAAGGGTA TGAACTATAC 
GACTTGGTCG TGTTGAGTGG TGGAGGCTCC GCCAATGAAG TCGGTGTAAT TGTTCGTGTG 
GGTCGGGAAG ACTTTACCGT CATCAACAAT CACGGTATTG TTCGAGAAAT TCGACCGGAG 
GAGCTGCGTG GAAAGCGCAA CTCGACATCA CAACGTGCGG TGGCTCTCGA TGTACAAGGC 
AACCAAATTC GTGCCAGTGA TTCCGTCAAC GTTGTGGAAG GTCCTCACAA AGGCAAGACG 
GCGACGATCA AGCGCATGAG CCGAGCGCAA CTCTTTTTGC ATTCTCAGAC CCGCACGGAT 
CATGCCGGTA TCTTTGTCGT TCGCAGCCGA AGCTGTGTAT TGGCCGGGAC ACGGACACAA 
GCCCGTGGCG CAACACCCGA CAGCGGAGTC AGCCCTTTCG CGACGCCTCA GTCGCAATCG 
CGAGGAGGGC CACAACCTGG TCGGGGCAAA CGCGACGATG GTTTGATCGG CAAGACTGTG 
CGTATTCAGG CGGGACAATG GAAGGGATAC CTGGGGACTG TTGCGGATGC GACGGCGACA 
CACGTTCAGG TCGAGTTACA CTCCCGATTA AAGAAAGTGA TGGTTGTTCG TGAACGAGTA 
GCCGTTGCGG GTGACAAGTT TGGGGCCACG CAGGAACAGA ATCGCATGGT GGATGTGAAT 
CCCAATCCCA TTGCCCCGAC TACGCCTTTT GTAGCGGCTG GTCAAACCCC AATGCACGGC 
GGAGCAACAC CGATGCATGG GGGTGCGCTG GATGGCGATA CCAGTGATGA GGTATGGCAG 
CCTGGTGGTG CTGTTGATCA GGATGCTGTT AAAGATGACG ATGGCTGGGG CTCGACCGCT 
AATGATGGAT TCGGTTCGCC GAAAGACGGC GACAGCGACG GTTGGGGATC TACTAGCGAT 
CAGCCGAAAG GCTGGGGTAC GTACCCAGCA GTCAAGGATA ATACTGTTAA GAAGGAAGTA 
CCTTCTACCA ATGGCAACGG TGTAAAGCGC GAGCAGGCAA AGCGCGAAAT GGAAGCAGAG 
CTTGATACGG AAGAGACGCC CGGCTGGTAC ATGGAACGAG TTTGTGTGCA GAACAAATCA 
AAAGATAAGC AGGGAGTCAT CAAGGAGATT GATCCTGCCA CAAAGGCGGC TGTCGTGGAG 
TACGAAGACC AAACATTTGA AACTCTTCGT GCGAGTGAAC TTGCTATGGT CCCACCCAGC 
GAACACGACA CCGTTCTGGT CACTGGGGGC AACGAAATTG GATTGGAAGG GTCATTGGTT 
TGCGTCGATG GTTCTGATGC CATTCTCAAG GATGCAAACG ATGAATTTAA GATTGTTGAG 
ATCTCGTTCC TGGCCAAGGT GAAAACTATA TAGGTATTAC ATCGTAGCCC TAACAAATCT 
AATTAACATA ACCCGAATGC AACG 

 

Protein sequence

MSKKFFRPPP QAMDDSDSEE DEEELLDDDA EVDDEDVTEV SPPNKSKPTN NANLSESDDD 
DDEPDERPPK RKGRHIDNNG NADARSSNKR AKPTSFFELE AEASDSEDDD ADDAAKQLHK 
DSEQMDEEAR EIIRQQDRRR AQAGGRFDRS VAEISADIEN RHRAQRRVRP PMDRDDEDDF 
DDGGAPPDAT PEGYTAVAQQ SLVPSVSDPS MWMVSCANGK EHELVCQIMN KCVAMARQGR 
PVGISSAIAA QSKGKIYLES FSEPAVVDAI QGVRGLLQYT MRLVPIGDMT TVMTVTSRKK 
PVQKNEWVRM TRGHYKHDLA LVKDVKESGL KCVVQCVPRL DLTLADLPPA EARMRRKTVR 
PPQKFFNPQE IAALGRHGLT RQRFPGLNLY CDYFDGNYYH DGYLLKEMTV GSMIKACTDE 
DPPTLDELQR FQRRQSKQNE EDGGDENEGS KMAASLLDEL SDLQGRTGLG KTKTGGGGGL 
LIGDTIEVIE GDLIGMRGKL VSLDGTTVKV KPINANVDLG GTDEIEFLGN QLRKYIPVGA 
HVKVTDGRYA NETGVVVAVE QLDGETDFTA VVLTDVTNKE ISVRTSQLRE SAEVASGQDK 
LQGYELYDLV VLSGGGSANE VGVIVRVGRE DFTVINNHGI VREIRPEELR GKRNSTSQRA 
VALDVQGNQI RASDSVNVVE GPHKGKTATI KRMSRAQLFL HSQTRTDHAG IFVVRSRSCV 
LAGTRTQARG ATPDSGVSPF ATPQSQSRGG PQPGRGKRDD GLIGKTVRIQ AGQWKGYLGT 
VADATATHVQ VELHSRLKKV MVVRERVAVA GDKFGATQEQ NRMVDVNPNP IAPTTPFVAA 
GQTPMHGGAT PMHGGALDGD TSDEVWQPGG AVDQDAVKDD DGWGSTANDG FGSPKDGDSD 
GWGSTSDQPK GWGTYPAVKD NTVKKEVPST NGNGVKREQA KREMEAELDT EETPGWYMER 
VCVQNKSKDK QGVIKEIDPA TKAAVVEYED QTFETLRASE LAMVPPSEHD TVLVTGGNEI 
GLEGSLVCVD GSDAILKDAN DEFKIVEISF LAKVKTI