| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_45915 |
|---|
| Symbol | |
|---|
| ID | 7201004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011676 |
|---|
| Strand | + |
|---|
| Start bp | 656708 |
|---|
| End bp | 660608 |
|---|
| Gene Length | 3901 bp |
|---|
| Protein Length | 1242 aa |
|---|
| Translation table | |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002180088 |
|---|
| Protein GI | 219118639 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.144901 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTCT TGACGGCCTT CCCGTCTCTC GATGCCACAC TCCGTTTCTT CTGCCTCCCT
TATTTGCCGT TGTATTCGTT CGTTTGTTTG TCCACGATCA ATAGCACCAA ACACATGTCC
GAGTTCCTAA CCACAGACGT CTTGGACGCG CTCCTTTCGG CGTCCCACGT CGAGCGACAG
GCGGCGGAAG CCGTACTCCG GAACTGGACG GTGGATCAGC GCATTCGTGC CTTGCTACAG
GCCTTGACGC AGCAGCCTTC AACGAACTTG CCACAATCAC AGGCAATTGC CGTACGGGAA
CCGGTGTCGC GTACGGAACA CCACCAACAA TTGCTCGCCG TCTTGTTGCG CCGGGAGATT
CAGCAATCGT CGCACGTGGC GCTCCTGCAC GACGCGATGG AACCTCTCCT CCAGCGGATT
GTAACACACT CCGATTCTCC CGGTGTTAGT ACCAATGTGG TGGGAGACTG TGTGGCCGAA
ATTGTTTCCG TTACGGCGGC ACTGGCCTCC CACGACGATG GCGTCCGTCT CGTACGCCGT
ATCCTGTCCT CCGTGGCCGA GCCGGTACGT ACCCGATCTA GTAGTCCGCG GGACGCTATG
ATGCAGTGTG ACACGCACAC TCAGTATACT CCCTTGCGAA ACGACACACG CATATGCACA
TACTACATAT ATTAATCTAC TTACTCACTC ACAATCAATG TCGGTCTCTC TCGTAGGCAT
CCCACGCCGA CCTTTCCTCA TTGAAACTCT TGGTTGCCGT GGCGGAACGG GCACCGACCG
TCTTTGCACC CGCCGTGGCC GATGACGTTT CGACTCTGGT TTCAACCGCA CTCCGTCACG
CGATCCATAC CGGCCCTCCA ACGGCCTCCC AGGTTCAACA CCCTGGCAAC GTCATCCGCA
TCCTCACCGA CCTCGTCGTC GCCACCGCCC GGGCTCACGA ATCTGTACAC AGTTACGGTG
ACAGTAGTGG TACCACCCTC GATCCCAACA CTCGGTCGAG TCAACTCGGC CGTACCTGTC
TCGTACCGCT CCTCGAAACT ATACGACACG TACACGATCG GGACGTCGTC TCCAAACTGT
TGCAAGCCTT GACCTCGGCG GCGGAACACG TTCCCGCGCT CCTGGCCGGA TCGCCGCACA
CCCTACCAAT ACTCGTCACC GTACTCAGCG ATGTCGCACA CGATGCCACC GACACGGATG
TCGATCTACA ACTCCAAGCC GTACAAGTAC TGGCCTCGCT CGTTGAACAC CACAACGTCA
AACATCATCG CCTGACCCCC CAACTCGTTC AAGCCATACT CCAAGGCACC AACGGTAAGC
ACGGAGTTGT CCAACTCTGT CTACACGCCA TGGTACACGG CACCGACGAC GATTGGGACG
ACGAACCCCT CGTCTGGCAC CAATATAGCA ATGACAACGC CTCCGATGAA ACGGCCGCCT
TTGCCCAGGA ACTCCTTCAC ACCGTACTAC AGGCACTCGG TAAACTCGCT TTGGACGTCG
TCCTTCCCAG TGTGGAACGC TTATGTTCGT CTCCCGAACC CACCGCCGTC CGCGCGGGAC
TGGCCGCACT CCAAGTCGCC GTCCAAGCCG CTCCCGTCAG CATTCAACCC CATTTGCCCG
TCGTCGGCCG CGCCGCCTTG ACCTGGGCTG CACCGACCCA CCATTCTTTC CGAGTCCAGT
TCCAAGCCAC ACAACTGGCC GGCGTCTTGT GTGAACTCCC CGGTGACGCT ACCGTACGTA
CACTGTACGG ACCGCAACTC CTGCAAGCGC TAGCCGTCGC CACCGGCAGT CCCTGTCCCC
ACGTAGCCGC CGTCGCCTCC ACCGCCATTG TTTCCTACTG CCGCGGCGAC GGCATCACCG
AGGTAGACGC TGCACAATTC GTCGTACCGT ATCTAACTGA CGTACTGCAC GCCCTCGTTC
ACGGTCCCCT GTCGCTCTCC CGAACCGACC GCAGCCAGGT AGTGGTCGTG ATTCGTGCCG
TCGGTGCCTG GCCTGCCTGG CGCAAGCTTC CGGTCCCGCC TTTGCCCCCT ATTACTCCCA
CGTCGTTCCT GGTCTGTGGG CCATCTCGCA GGATGCCGCA ACCGGTAATC CCGAACTCGC
CCACTTGCGT GGTGCCGCGC TCGAGGCCGC TACCATCATC GGGCAGGCCT TGGGTGACAC
ACACCGGGAA CTCTTCGTCG CCGATGCCGT AAACATGATG GACTGGGCGG TGCCTTACTT
GAACTCCGGG GCGACCCACG TACCACTCGA ACAGCTCTTG TCAGCCTGTG CCCGCGTCGC
TTCGGTCCTC GGTGAAGACT ACGCTCCCTA CGCGGGAGTC GTACTACCGC ATTTGATGCA
ACGCGCCACC GCAGCCGCGG ATATGGAAGT CACTGAAGGC GACCAGGCCG GATGGGACGC
CACCCAACGA CAACAAGTCG TCCGGGATGA TGAACAAGGC ACCGAGAGTA TGACCATTGC
CATACCCGGT CGTGGCCTGG CGAAAGTCAC CGTCAACACA ACCAGAATTC AGGAAAAAGC
CCAGGCCGTT CGCGCCATCT ACGAGCACGC GGTTGCTCTG GGTGCCGCCT TTCCGCAATC
CGAAGCGTGT CTGGACGCAT TTCTAGAGTT GGTGCGCTTC CCGTACTCGG CTGAGATTCG
GGCCGTGTCG GCGCAAACCC TAGCAGCCAT TTACGAAGCT TCCTGCGCCC ATGGCGAAGA
CGGGGGTATG CGTGTTCCAG CAACGTACCT TCCACTCATA GCCCAAGGAA TTGCCACACA
AATCTACGAG CAGGATGAGG CCGATATGGA CGCGCTCTAC GCCATGGCAG ATTCCCTCAG
CGAGATCTAC TATAGTATCT ATCGCAGGCT CGCCAAGTTT GGACCAGTGT TGCTAGAGAA
GTTTACCGTG GGTACGGCGT CAGCAACGGT ACAGTTGTTC ATGCAAGCTA TGGTGGCTTG
TTTAGAACGA CGACGCGAAA CGGCTGATAT TCTTTCCGGG AGCCCACAAT CTCCGCTCGG
CGAAGATGAA CACGCCGAAT ACGCAGAGTT GTTGCGGCTA GAGGAAACAC TCTTGACGCC
CCTCGTCGAT GCAGTTGGAT ACACGCTAAA ATTCCTGCGC CACGAGTTCC TCCCGATTTT
CGAGGCGCAC GTACTCCCCG TGCTCGGTCC GTACCTGTCG ACCGGCAACG ACATTCGCGC
ACGGCTCGCG ACCGTTTGTC TCTTTGACGA CTGTGTAGAA TATTGCGGTG CCGCAGCCGC
CGCCAAGTTC GCTCCCATGC TTATGGAGGG AGCCTTGTTG GGTATGAACG ATGCTAGTAA
TGGGCAGGAC GAAGAGCTCC TGAGGGCGGC CATTTATGGA ATTGCACAAA TTGCCCGCTA
CGCTCCGAGT TCCGTACTAG CACCTCACGC CCACAGTCTT GTACAGCATT TAGCAACCAT
CTCCAGTCAG CCCAAGGATG AAGCCGACAA TGTGGCTATT CACGAGAATG CTGTGTCGAC
GCTAGCGTCA CTCGTTCTGA TCGGCAACGC TCCTTTCCGA GGATCCGCGT TTGTCAAGCC
GGAGACGGCC CTTCACATTT TTCTCGCGAA TTTGCCGTTG CGCGAGGATG CAGACGAAGC
CAAAATTTGT CACAGCGGAT TGTGTGATCT AGTCGAGCGT AATACGATCG ACGTGACAGA
GACCTGTCAG GAACTAATTC GCATCATCGG TGAGATACTG GTTTATGTGG ACGACGAGGA
GGATCTTGCA AGTCCCGAAA CGCTCCTGCG CAGTGTTGGT ATCTTATTTC GCATGCAAAA
GGAAGTCCAT GGCGACGCAA TGCAACGGGC ATTCGCGTCA ATTCCGGATG AGGCACAGGC
GGCGATTAAT AACGCCATGC AGCAACATTC CCGTCAATTC AACTGTGTCG TGACACCGTA
A
|
|---|
| Protein sequence | MAVLTAFPSL DATLRFFCLP YLPLYSFVCL STINSTKHMS EFLTTDVLDA LLSASHVERQ
AAEAVLRNWT VDQRIRALLQ ALTQQPSTNL PQSQAIAVRE PVSRTEHHQQ LLAVLLRREI
QQSSHVALLH DAMEPLLQRI VTHSDSPGVS TNVVGDCVAE IVSVTAALAS HDDGVRLVRR
ILSSVAEPAS HADLSSLKLL VAVAERAPTV FAPAVADDVS TLVSTALRHA IHTGPPTASQ
VQHPGNVIRI LTDLVVATAR AHESVHSYGD SSGTTLDPNT RSSQLGRTCL VPLLETIRHV
HDRDVVSKLL QALTSAAEHV PALLAGSPHT LPILVTVLSD VAHDATDTDV DLQLQAVQVL
ASLVEHHNVK HHRLTPQLVQ AILQGTNGKH GVVQLCLHAM VHGTDDDWDD EPLVWHQYSN
DNASDETAAF AQELLHTVLQ ALGKLALDVV LPSVERLCSS PEPTAVRAGL AALQVAVQAA
PVSIQPHLPV VGRAALTWAA PTHHSFRVQF QATQLAGVLC ELPGDATVRT LYGPQLLQAL
AVATGSPCPH VAAVASTAIV SYCRGDGITE VDAAQFVVPY LTDVLHALVH GPLSLSRTDR
SQVVVVIRAV GAWPAWRKLP VPPLPPITPT SFLDAATGNP ELAHLRGAAL EAATIIGQAL
GDTHRELFVA DAVNMMDWAV PYLNSGATHV PLEQLLSACA RVASVLGEDY APYAGVVLPH
LMQRATAAAD MEVTEGDQAG WDATQRQQVV RDDEQGTESM TIAIPGRGLA KVTVNTTRIQ
EKAQAVRAIY EHAVALGAAF PQSEACLDAF LELVRFPYSA EIRAVSAQTL AAIYEASCAH
GEDGGMRVPA TYLPLIAQGI ATQIYEQDEA DMDALYAMAD SLSEIYYSIY RRLAKFGPVL
LEKFTVGTAS ATVQLFMQAM VACLERRRET ADILSGSPQS PLGEDEHAEY AELLRLEETL
LTPLVDAVGY TLKFLRHEFL PIFEAHVLPV LGPYLSTGND IRARLATVCL FDDCVEYCGA
AAAAKFAPML MEGALLGMND ASNGQDEELL RAAIYGIAQI ARYAPSSVLA PHAHSLVQHL
ATISSQPKDE ADNVAIHENA VSTLASLVLI GNAPFRGSAF VKPETALHIF LANLPLREDA
DEAKICHSGL CDLVERNTID VTETCQELIR IIGEILVYVD DEEDLASPET LLRSVGILFR
MQKEVHGDAM QRAFASIPDE AQAAINNAMQ QHSRQFNCVV TP
|
|---|
| |