| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_45680 |
|---|
| Symbol | |
|---|
| ID | 7200460 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011675 |
|---|
| Strand | - |
|---|
| Start bp | 910713 |
|---|
| End bp | 914529 |
|---|
| Gene Length | 3817 bp |
|---|
| Protein Length | 1240 aa |
|---|
| Translation table | |
|---|
| GC content | 50% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002179939 |
|---|
| Protein GI | 219118324 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAAA GCTTGGTTGA CGGAACGGGG ACCGTACCAT CCATCGGGAC TGCCGATATA
CCAACATACT TGTGTTGGAA TCAAGAAAAA CACCAGCACT GTGGAAAGGA TATCCTTTTA
CAAAACACGG AAAGCGGTGC GACGCAGAAG AGATACATAG CTGCAGTGAT TGTTGTCAGC
CGCAGCCACA GCCACACAAC CTCCGTGTCT TTGTTTCAAA CCAAAGGCGT TGTTGATACC
AATCCTGCAT CGGTCGTCTC CCGACGGCAA CACGCGCGTC TCGGGAATAT TACGCGTGGT
ACGTGTGTGT GAGAGCCTAC GTCAGACAAA TCTATAATGG TCAAGGTGCG ACGCATACCA
ATCCGCTCCC ATCGTGGCAT CGACGGTGAA CGCGGAAAAC AACGAGAACA ATTCCCACGG
CAATCACCCG ACGCCCAGGA TTCCGCTCTG CGTACCTTAC TAGGGTTGCA CCGAAAGCCG
GAAGATTTAT CCTGCTACCC GCTTGTGGGT AGTACTGTTA CTTGTTCGCG CGGAGATAAT
GACGATGTTC CTTTTCCAAC GGCGTGTGAC GCATTGCGGT TCCGTCTCGA AGCATTGGCA
CTGTATCATC GTACCCCATT GGAAATTGCA ATGCCGGAAC ACGGATCCCT GTCTTCGTCG
ACACATCATT GTAAGAGCAC CGCCGGAACG GCACAGAGTA CCGCACGAGT CCGTGCAATC
ATGGCCACGT GTCCACAAAA CGACTGCGGC TTTTGTGTGG AATCTCGGCC CATTCGCCGA
CACCGTACCG AATGCCAAGA AATTGTCGAT TGGCAGCCGC ACACGTGCTC CGGTCCTGGT
ACGAACATCA TTACGACAAT TTTCTCCGAC CGGAGTAGGC TGGCGGTCGA GGGCTCCGAT
GGTGGTACAA TTACACTTTG GACGGACGTC GACTTTTGGT GTCGTATTGT CCGTACTTGC
CCCATTTTAT CCGCCGAATG TGGTCGGAAC GGTGGTGTTT CCTTGGTACG ACTGCAGGCA
GTATTCCAAA AACGTTACGG TATGGTGCTG CCACCGTCCA CCCGCGAATT TCGTCAAACT
TGGAGTCGCG TCCGCGAACA GCGTCATCGT CACAGCATCC AAAACCACGT CCACTCCATA
ACTGTGAAAC CAGCAGACCA ACAGCAGCAA CAGCCAGACC GGCCGTTAAC CGGAACACCT
ACGCCAACTC CCACGAAAAT CACAACTGAA ACCTCTTCTA CGCCTTTGGC GTCCACAAGG
TCCCATTACC ACCCCGCTCG GTCACACAAG CGCAAGCGTG TGGCCTCACC GGTGAGCGTT
TTGGAATCCT GGATCTCCTC AACGACGACC CTATCAATAC GGACACTGCC ACCGAACAAG
CTACGACGCC AATGGCATTC TTTCTCGTCC ACATTGCAGC GCGCCGTCTC ACCGGGTGGT
CTATGGCAAG TATTTGCCAA ATCGCCGGCC ACCGCATCAA AGGTAGCCGT TCCCGCAGCA
CATGCTGGGG GCGGTCCATC TAGCTCAGTT TCGAAGGAGA CCCACACGCG ATCGAACCTT
AATACGATGC CAGAGTCAAT GGGAGTGGCG CAGAAGCCGA CGAGGCCTAC TAAAGAGAAC
ACTTCTACCT CCGAAAGTCA CGGCATGATG GGAGCAGAAT TCCAACGATC TCTCGAAAAC
AGCGCGGAGC TGGATACAAA GGGTTCGGCT GAAATCTCTA GCGACTCGAC AACTCCAAAA
GACTCACTCA AAAATAGCCA ACGTGAAAGT GGGGGAAAGA TGCGACGGAC AAATAGCCGT
CGAAACAGTG ATCGAGTTGC CGGTGGGTCA TTGCGTATTG CACATGAATT ACCCTCGTCC
ACAAGCAGTA CATCAGGACG CTCCACCAAG GATGTACCGG AGTATGTCGA CCTCGAATCA
GCACATATCA ATGAAGCGAA ACTCACATCA AAAAGTTGTT CTACGAATGG ACAAAAAGGA
AGGACTCGGC ATACCGCGGC AGCTGGGCGT ACCGCTCATC TGCGAAATAG CCACCGACGA
TCCCGATCGG AGCACTCTGG TGGAAAGACA AAGCACCAAT ATTCACCTGA AGAGGATCAA
GCCGTAGCTA CTGGTGATAC TCATCCTCGT CGAGTTAGCC TACGACGAAC TGCTCGCACA
CGTCTAGAAG ACTGTGTCCC TGTTTTAAAG AATGTTTCAG ATACAATTAC GATGGATAGT
CCGATCAACG AAATCTCCCA GCCAAAGCGT CGGCATCGAA CAAAACAGTG TATTACTGTC
CCACCATTTT GCCACAAAAC GCGTGTTGGG CAGTCGCTAA CGAAACCGAA TGACACAGGT
GAAGCGCTTA CGATACCAAC GTTTGAAGAT GTTAAGTTGA TTCTGATGAA GGCCGGATAT
ACATTCGCTT CGAAATTTTT CGCTCGACCG ACGAGCTGCG GCCGACAGCG AGTGTACGGC
CTTGAATGGT TCGATAGCGA AATGGCTTTC CGTAAGCACC TTTGTGCCTT CGGCGTGGGC
GGGGATTGTA ATAAATGGGA CAAATGGGAA AAGGCACTGG TGGAGAGATG GGTCCGGTAT
GACATTGTGG ATGTTAGCTG TTTTTCTCGA GAGTTGAACA CATACGACCT TATCACACCC
CACCGAGCAA TGCAGTTACT GTATCGCCTT GGTTGTTGCT TGCGTTGCTT CAACCCTCAA
GATTTGTACG TTCTCCCTGA GGTGAAAAAG GGTCAGGAAA TACTTGGTAT AAATTCATTT
TACAACGAAA ATGATCTGTG CGTCCACCTG GCTCGTTTTG GATTGCCTCG TTCTGAAAAA
ACAAAGCTGA TGGACAGCCG TGATATCTTG AGCTTACAGC TTTTTCTTTC GGAACCTGGT
GATCTACTCG ACACTTTGTA AGTTTGATTA CATTTTCCAC GTACAATAAA ATTTGATTCT
TCATTTCTCA CCATTTATTT GCAGCGAGAG AATGGAACAA GTTTCTGTGG ACTACGCTAC
CGCCGCACAC AGGAACGCAG CATGCTTTGA TAGACAAAGT ACTGGAGGAG TTCAACACGA
CGGAACTTCA TCCCTTCCCA CTTCCAGTCG AAAATACGCT TCTGTGCACC CGCAAATCAA
AGAAACAACG CCTTTCTATG TTGTCCCAAT GAAAAAACGC ACTACTGCTC TGGGTTCGTT
GCTTTTCCGA GAATATGACG CACTCGTGGC ATTGAAGCAG TGCGAGGGTG TCAATTTTGG
TGAAAGCTGG CTTTCTGCAG TTGCCGCGAT TGAGACGAAG TGTGACGAGA TTGAGCAGCA
TTACAATTTC GAGTCCATGA AGAAAGCTGT CATTTCAGCA GAGTCCAAAG AGTGGCAAAA
GTTTGAAAGA GAAATGGGTG CTAAAGAAGA CCAAGAACGA TATGTGCGAA AGGAAGATGA
GGGGATAGAA AACAGCGTCT TCGGTCGACG CATGGTGTCC GGTCAAACGA CAAAGGCAAC
TGAGCCCGAA AGCATCTCGT TTCTTGGAAA GGCCGTTCAG CAGTCTATGC TGTTTGAGAA
AAGGCAGGAA CGGTCACCTC GCAAACGTGC GGCGGGCTTT GTACTGCCCG GAGAGCGGAT
AAACAGGACG GATCAGCTTG TACCAGGCTT CCGCAAGCTG GATCTATACG ATACCTGCCT
CACCTTCGAC AATGACAGCA ATGCCAATTC GTGCAACTGC ACAGGTCGGA CGTTAAAAAC
TATGGCAAGA AAAGAGGCTT CATATATTGC TTTGCGTGAA ATCAAGGCTG CCATATCCTT
TCTTATTGAC TATGATGACG CTCAGTCAAA AGTTTAG
|
|---|
| Protein sequence | MDQSLVDGTG TVPSIGTADI PTYLCWNQEK HQHCGKDILL QNTESGATQK RYIAAVIVVS
RSHSHTTSVS LFQTKGVVDT NPASVVSRRQ HARLGNITRD KSIMVKVRRI PIRSHRGIDG
ERGKQREQFP RQSPDAQDSA LRTLLGLHRK PEDLSCYPLV GSTVTCSRGD NDDVPFPTAC
DALRFRLEAL ALYHRTPLEI AMPEHGSLSS STHHCKSTAG TAQSTARVRA IMATCPQNDC
GFCVESRPIR RHRTECQEIV DWQPHTCSGP GTNIITTIFS DRSRLAVEGS DGGTITLWTD
VDFWCRIVRT CPILSAECGR NGGVSLVRLQ AVFQKRYGMV LPPSTREFRQ TWSRVREQRH
RHSIQNHVHS ITVKPADQQQ QQPDRPLTGT PTPTPTKITT ETSSTPLAST RSHYHPARSH
KRKRVASPVS VLESWISSTT TLSIRTLPPN KLRRQWHSFS STLQRAVSPG GLWQVFAKSP
ATASKVAVPA AHAGGGPSSS VSKETHTRSN LNTMPESMGV AQKPTRPTKE NTSTSESHGM
MGAEFQRSLE NSAELDTKGS AEISSDSTTP KDSLKNSQRE SGGKMRRTNS RRNSDRVAGG
SLRIAHELPS STSSTSGRST KDVPEYVDLE SAHINEAKLT SKSCSTNGQK GRTRHTAAAG
RTAHLRNSHR RSRSEHSGGK TKHQYSPEED QAVATGDTHP RRVSLRRTAR TRLEDCVPVL
KNVSDTITMD SPINEISQPK RRHRTKQCIT VPPFCHKTRV GQSLTKPNDT GEALTIPTFE
DVKLILMKAG YTFASKFFAR PTSCGRQRVY GLEWFDSEMA FRKHLCAFGV GGDCNKWDKW
EKALVERWVR YDIVDVSCFS RELNTYDLIT PHRAMQLLYR LGCCLRCFNP QDLYVLPEVK
KGQEILGINS FYNENDLCVH LARFGLPRSE KTKLMDSRDI LSLQLFLSEP GDLLDTFERM
EQVSVDYATA AHRNAACFDR QSTGGVQHDG TSSLPTSSRK YASVHPQIKE TTPFYVVPMK
KRTTALGSLL FREYDALVAL KQCEGVNFGE SWLSAVAAIE TKCDEIEQHY NFESMKKAVI
SAESKEWQKF EREMGAKEDQ ERYVRKEDEG IENSVFGRRM VSGQTTKATE PESISFLGKA
VQQSMLFEKR QERSPRKRAA GFVLPGERIN RTDQLVPGFR KLDLYDTCLT FDNDSNANSC
NCTGRTLKTM ARKEASYIAL REIKAAISFL IDYDDAQSKV
|
|---|
| |