Gene PHATRDRAFT_44627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_44627 
Symbol 
ID7197630 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011672 
Strand
Start bp1090335 
End bp1092859 
Gene Length2525 bp 
Protein Length652 aa 
Translation table 
GC content52% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002178640 
Protein GI219115689 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGGTGA CAGGCACCCC AGCCTGCTCT GGGAAAATTG AACCTTTTAC CATCCAATCC 
GACATTTCTC GGGCATCCGG ATCTGCGGTC GGTGATGTTT CGGTCAACAA GAGAATGGGT
GTTGCTCCTA TTCTTACAGT TGATCCGTTC CAACCTCTAC CCCGCAACCT CTCAACCCGT
CCATTATGAC GATAGTCATC CAGACTACAA GCTGCCCTCC TCAATGGCGG AAGAGACGAA
CCACGGTAGC CGCTAATGTG GTGTTTGTGC TACTCCTGGC GATGCAGAAA ACAAGAACGT
GTGCTGCCTG GGCAGTCACG TCCACTGTTT CCTCGCTGGC GTACCCGTGC CACCAAACGG
CAAGAGTTGT ATCGTCACCG CCGTCGTCAT CGTACAGATA CAGTCATCGT CGCGCAACTC
CTTCGGAAGA TGGGGCTTCG GATACGACCT CCAGATCAGA CCTATCCGTT GCGAAAAAGA
TGGTGATGAA AATCCAACAT ACTATTCACC CAATCGACCA TTGCAGGACT TCAAAAGCTA
TGCGGTGACT AGTGCGGACG GCAACGCAAT CTCTGACAGC GATCAGAGTC TTGATTCATT
GGAAGCGTTG TCATCGTCCG TCAACGAATA CTCTTTCTTC GACGAAGCCA TACTGTACGT
TCGCGGTGGC AGCGGCGGAC AAGGTTCCAG CACCTACAAA AAAGCCGCAG GTGGACAGAA
CGGACAGCCC GACGGAGGCA ACGGTGGTCA AGGCGGAAAC GTGATTCTTC AAGTAGACGT
CTCACTCAAT ACATTGGCAG GACTCACACA AGCCTGGCGA CCAAATTCGT TCGGCGGTAG
TGGTGCCGCG GCGGCTCCCC AATCCACGGC TACCTTGCGA CCCAAATCGT TTCGAGCCGA
AAATGGCAGT GACGGCGACC GCCAATTTAA AAATGGTCGC TACGGAAAGG ATGTGTACAT
CCGTGTACCA CCGGGTACTG TCGTTCAGGA AGAGATATCG CCCGGAGACT ATCGCGAACT
AGGTAGCTTG ACCGAAGTAA CGGACGAACT TGTAGTAGCA CAGGGTGGGC AAGGGGGCGA
AGGTACCGGT GTTCAGGGTC GCAACCGCGG GGTTCGGCGA CCACGGATAC CGGCGACTGG
GGGCGACCGT AAAGTACTCA AGCTTACTCT GAAAATTGTC GCGGACGTGG CCCTTGTGGG
AGTTCCCAAC GCGGGTAAAT CCACCTTTTT GGCCGCCGTG ACACGGGCCA AGCCCAAAAT
TGCGAACTAT CCGTTCACCA CCGTCATTCC GAATCTTGGG GTATGGATTC CGGGTGGGGC
GTTGGAAGAA GCACAGTCCT CACAGCCAGA TAAGGGTGCC GGTAGTGAAG GGCTTGTCTT
GTGTGACGTG CCGGGCTTGA TTGCCGGGGC TGCGCAGGGT GTCGGGCTGG GACACGCGTT
TTTGCGACAC GTCGAACGCT GTCACGTCAT TCTGCACTTG ATCGATGCGA CGTCCAACGA
CCCAGCAGCT GACTACGAAA TGTTGAATCG TGAAATAGTC AAGTACGGAA CTGGTCAGCT
TGCACAAATG CCTCAAGTTG TCGTTATCAA CAAGATAGAT GCCTTTGAAG GTGCCAAACA
AGAATGGGAA GAAGGACTTG AAGTTAAATG GGCACGGAAT GATCTGGAAC GAAAGATGAA
AGAGTCGATG CCGCATTCAA GGCTCATGTG GATGAGTGCG AGGGAACGTG AAGGTGTCGA
CGATCTCATG TCTCGACTGG CTTCCTTTGT CAAAAAAGTC AAGGCTGGCG TACCGTAGAC
ATTTGTGCTA CAGATGTACA AATCAATAAT CTACAGTGTC AAAGAGCCTT TTCAATCGCT
GTCCGCTCAG ATGAGCGTTA CTCATGTCCC AGGCAAACAC GTGCCACACA TGCAAAATAT
TTTGTATCAG CCAACACTCA TGGCTTGTTG GTCGAGCCGA CATATCCATT TCTATTTTAC
GGGACATCAC CAATCCGTTT CGATCCCATC CGGAATGTTT TTGGACCGAC AGCTCGTCGG
CGCCTCCAAC GGAAACCACG CGAGGGCTCC GGGCAGAGAA AAGCCTAGCC GTACCTGGAT
TCGCCTGTGT ATCGAAGTAC TGGCTTCAGT GAACGCTTGG AGCACCGTGA CAATCCAACG
TAATTTAAAA AGCGTCGGTT TGGAGGGTTG CCGTTCTTTA GAAACGGCGT CATTCCTCTC
TCCGGAGTGC TGGGGTCAAG CTCCGCGTCT CTCTGGCTAG CTGAGACGGC AGTGCTTTCA
TTCATAAAGG ATTTCCGCGA AGTATGTAGA TTTCCGTGTT CCGTTTCTAT GTGGCTTGAA
GTGGAGCTCG TTGCGACACC GCCTTTCTCG TATCTCAGAA GTGCGGAATA TTTCAAATGA
CGAGGTGCAA TTACAAGTCC AATGAGGCTA ATGAGGGCTT TCCACTTACC TTCGCCCGAC
ATTCATTATG GTCTCATAGT CGGCGATCAA AAAGTAACAC CTATGATAAA GGTTTTACGC
GACAC
 
Protein sequence
MLVTGTPACS GKIEPFTIQS DISRASGSAV GDVSVNKRMG VAPILTIQSS SRNSFGRWGF 
GYDLQIRPIR CEKDGDENPT YYSPNRPLQD FKSYAVTSAD GNAISDSDQS LDSLEALSSS
VNEYSFFDEA ILYVRGGSGG QGSSTYKKAA GGQNGQPDGG NGGQGGNVIL QVDVSLNTLA
GLTQAWRPNS FGGSGAAAAP QSTATLRPKS FRAENGSDGD RQFKNGRYGK DVYIRVPPGT
VVQEEISPGD YRELGSLTEV TDELVVAQGG QGGEGTGVQG RNRGVRRPRI PATGGDRKVL
KLTLKIVADV ALVGVPNAGK STFLAAVTRA KPKIANYPFT TVIPNLGVWI PGGALEEAQS
SQPDKGAGSE GLVLCDVPGL IAGAAQGVGL GHAFLRHVER CHVILHLIDA TSNDPAADYE
MLNREIVKYG TGQLAQMPQV VVINKIDAFE GAKQEWEEGL EVKWARNDLE RKMKESMPHS
RLMWMSARER EGVDDLMSRL ASFVKKVKAG VPVKEPFQSL SAQMSVTHVP GKHVPHMQNI
LYQPTLMACW SSRHIHFYFT GHHQSVSIPS GMFLDRQLVG ASNGNHARAP GREKPSRTWI
RLCIEVLASV NAWSTVTIQR NLKSVGLEGC RSLETASFLS PECWGQAPRL SG