| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_44549 |
|---|
| Symbol | |
|---|
| ID | 7197794 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011672 |
|---|
| Strand | - |
|---|
| Start bp | 867228 |
|---|
| End bp | 868885 |
|---|
| Gene Length | 1658 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178592 |
|---|
| Protein GI | 219115593 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.425868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTTTCTTTAT TGTCTGTTCT TACGAAACTC TTGGTACCTT CGTCGCGGCA CATTCGCCCC
ATGAAATTTG CGCTGCAGAG GCGTCCACTG GGTTCTGGTC GGAAAGCCGT AGCCTTTGTG
AGCTGGAGTT GCCTGCTCCA CACCACAACG TTGGCGATGA CGGTGGTTCC GAAAAACGTC
GTGGTAGTCG GTGGCGGCGT CCAAGGTACC TCGGTAGCCT ACCAGCTGGC GTTGCGGACC
CCTGCGTCGA CGACCATCAC GATCTTGGAA TCGCAACAGC CCGCCTCGGC GGCCTCCGGA
AAGGGCGGGG GCTTTATGGC CCGCTCCTGG GGGGATGGAT CACCGACGCA GGGTTTGCAC
GAACTGGCCT TCGACATGTA CAGCGATCTA GCCCAGACAT TGGGATGCGA GTCCTACCGG
AAACTTCCCG TCTTATCCGT AAGCCCCGGA TACAACGGTA TGAAGGCAGC GCGGAAAAAT
AAGGACCTGG CCAAGATTAT ACCCGGCTGG CTGGACGGAA CAGTCGGACG TGTGGGGAGT
ATGGGTGGCG GTGAGGACAC TGCTCAAATT ACGCCCCAGG AATTCGTAGA AAAGATGCTC
GAACACCAAA GTCGTATTCA AGTTGTACTG GGAACGTGTT GGGGGGTTGA GACGGATCAG
GGATCAGAAC GAGGCTCTCG CAAAGTTGCC ACGGTCGAGT ACAATCCAAA AGAAAATCCA
GCAGAAAAGA AACTGCTGCC AGCCGATACC ATCATTGTCA GTGCCGGTCC TTGGTCCTGC
GCGGCCGAAG ACTGGTTTCA TGGCGCGGTT CAGTTACCCA TGGAAGGTAT CAAGAGTACA
AGTATTGTCT GGAAGAAACC GGAAGGGAAT GATGTTGATG CAACGGCGTT GTTCTGTGGC
GAAGACGATC GGTTTGGAAC CCACTGTAAG TACGACCACG GCATGGACTT TTGCAGACGC
TAGACCACTT GCATCATCTA TACGCTCCTG CAGCAGATCT CACACTGCAC GCCAATCTCT
GTGTAGTGGA AGTGTATCCC CGACCGGACG GTACAATCTA CATTTGTGGA ATTGGAGGTT
CGGACTATGT TTCGAAAGAG GATTTAAAGG AAGGCGCGTT TCGTGAAATT TGCGAGGCCA
ACGAATTGCG CGTGGCGGCG GCAAAAGCCA GCTTTCAGGA AATGTCGTCC GTGTACAAGA
CGTCAGGAGA ACTCGATCGA TCTCAAGCTT GCATGCGACC TTGTCCTCCC GACGCTATGC
CATACATGGG TTCAGTTCCG GGATACGAGG GAGCTTACAT CAACGCGGGT CACAATTGCT
GGTGCGTATG ATGCATTTCT GACACACTGG CGGATCAAAA AATGTGACTC TACGGCAGTC
AGAATGATAG CTGACTGATG CATCCTTCTT CTTTTTGTTG TTGACTACCA TAGGGGAATT
GCGTGGGCAC CAGCTTGTGG CAAAGCCATG GCTGAGCTGA TACTTGATGG TGAGAGCCGT
TGCGTCAACT TGACACCATT TGATCCGGCA CGATATACGC CAGACGCCCA ACGGGGCACA
CGCGGACGAA AACAACGAGG GAACAACGTC GGGGAACAAT GGTAGGAAAG GCTGTCACCG
AAACTTGCTT GATAACTAGC TTCCGTAATC TTGTTGCG
|
|---|
| Protein sequence | MKFALQRRPL GSGRKAVAFV SWSCLLHTTT LAMTVVPKNV VVVGGGVQGT SVAYQLALRT
PASTTITILE SQQPASAASG KGGGFMARSW GDGSPTQGLH ELAFDMYSDL AQTLGCESYR
KLPVLSVSPG YNGMKAARKN KDLAKIIPGW LDGTVGRVGS MGGGEDTAQI TPQEFVEKML
EHQSRIQVVL GTCWGVETDQ GSERGSRKVA TVEYNPKENP AEKKLLPADT IIVSAGPWSC
AAEDWFHGAV QLPMEGIKST SIVWKKPEGN DVDATALFCG EDDRFGTHLE VYPRPDGTIY
ICGIGGSDYV SKEDLKEGAF REICEANELR VAAAKASFQE MSSVYKTSGE LDRSQACMRP
CPPDAMPYMG SVPGYEGAYI NAGHNCWGIA WAPACGKAMA ELILDGESRC VNLTPFDPAR
YTPDAQRGTR GRKQRGNNVG EQW
|
|---|
| |