| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_43552 |
|---|
| Symbol | |
|---|
| ID | 7197582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | - |
|---|
| Start bp | 795123 |
|---|
| End bp | 798302 |
|---|
| Gene Length | 3180 bp |
|---|
| Protein Length | 971 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002178005 |
|---|
| Protein GI | 219112507 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.774573 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CGAGCTGCTC TTGGTGAAAT ACGCAGCCAG ATTCGTAGAG CTGGATTTGA TTCTAGTCTC
TTGAGCGACC TCACTGTACG CAAGCTACGC GCAGGAAGCA GCAGATCCGT TAACGGCCAC
AGATAGATAC ATCGTTCGCG CAGAGAAATA CGGAACAACT TGTACTCACA TTCTGGACGA
CTGTAACTTG AAATGCTGCA CACCCCGGCG TCTCCATCTG GAAGTGTTGG ATCGTTGAAA
CGAGATAAGG AGGAAACTGA TTTTGATTTT GATCACGACG AGGGCTTCAT CATACCGTTA
CAGATGTATT CTAACACAGG TTCACGCATG CGGAACACCG CTCTGACTCC ACCGTCCCGG
CGCAAGTTTC CCTGGATGTG GACAATGCTT GTGTTCCTAA CATTGATTAG CATAGCCTTT
GCTTTCTGGA GCGAGCTCCT GGAAGCCTTC CCGACTATTA CGATACATTC AAATATCGCC
AATCACGAAA GACAAAGTGG AGTTTTTCCG ATCCAACCCG TTGCGTCCGC TTCACGACGA
GGCTCTGGCG CGCCGGTTGC GGTCGTTGTC GATACGCGGG AATCGGCGGG AGAACAACAA
CAAACAATAA TGACGACTGA AGCGGCTGCA TTTCCACCTC CGAAATTGTC GGGAATTCCT
TTGCACGCCG CCCAGGCACT AGCTTGTCGC CAGTCCGTAA TTAACTTCGT CATCAACGCG
ACGGACGGCA AGGATGAATG CGAAGGATTG AAAAAAGCCT TCGAGCGTAC GTGCAGCAAT
GACGGTTACG AAGACTCCGA CTCTAAAGAT AAAGCAGGGA GACGCAAGCA CCGTAACATG
AGTGAGAAAC TATGGGACAA ATCAATACCC AAAGTAGATC GATGGCACGA GTCGGTGTTC
TACCTTTCGC AAACGCTTCG CCGGATAGGT GACTGGCTTA TGTGGAAAGA ACCTGCCCCC
TTCTTTTTGG CCGAAGACGA GGTTGCCACG GACGAAACTT GGCAAACTGC TCGCTTTCTC
GTAAAAGAAG ATTTAGACCG CGTTGTATAC CGAGATATTC TGCATTCTTG GGCAACGCTG
GATTGTCAGA TCAGGCCTGA GCTTTGCCAA GCAAGAGTAC GCCGAAAACT CGATGAAAGC
ATCGAGTCCT CCTTTGCCAA TGATGGAAAC AAGGAGGTAC AACACTCGAA CCACACACAT
TCTGGTGGTG GATTGTCTCT AGATCTTCCT TTCGCCAGCG GCCATGTTTC GGAAAAGGTC
ATGGGTGAAG CTCTCATGCT TCAACAAGGA GATAAGCTCA TTGAAAAAGC CACCAATCAC
ACGTCGACAA ATGCAGCTAA ATCGGAAGCG GCAGCCTCTT CCAAGGCTGT ATCGGATGCG
TCTGCTGCAG TATCGGCCGT CCTGAACGAT CCTTCGTCTA TTGAAGCCAG GACGTGTTGT
GCGTCCATTC TGAACGTCTA TCATGACAAC TGCAGTACCG ATGTAGACGA TCAAGTCTCA
GACAGCCGGC TTTTTTTTGT CGTGTTTGTC ATGGCTTTAT GTGGAATGGT GAAAAGCCTG
ATTCGTCATT TCAAAATTCT GTGGTTGCCC GAAGCTGCAG GCTGCATCAT TGTCGGAGGT
ATGTTGGCAA GTTTATTTAC GTTTTCCTAT TCATCACGAG CTCACCACAA ATTAACTTCC
TTTTGAACAG TATTGAGTGG ATACGGTATG TTGCTGTTGC CACACCACGA CATTAGCTTT
GATGGAAACT GGTTTTTGCG CATATTGGTA CCACCAATCA TCTTTGAAGC TGCAATCAGC
ATTGACAAGC GAGCTTTCAA CCGCCACATT GTGCCAATTC TGATTTACGC AGTTGCTGGT
ACACTGGTGG CGACTGTTTT GACAGCATCA ATTCTTCATC GAGGCACGAC GATGCTGTCA
GACTGGTGTT ATCCTATTCC TTACGTTGAG GCCCTTGCTT TTGGTGCGCT GATTTCATCT
ATTGATCCAA TTGCTGTCTT GAGTGTGTTA AGTAACATGG GAATGACAGA TACAGATACA
ATATATGTCG TGATTTTTGG GGAGTCGTTA TTGAATGATG GCGTCGCAAT TGTTCTCTTT
CATACGCTTG TGCATTTTCT TGACGAAACA CTTGTGATTG ATCGGGCAGC CGTGATAGCT
GCCGTCATTC ATTTTGTGGT GGTAGCGTTT GGCTCATTTT TAATCGGTGT CGCATCAGGT
ATGCTCTGTA CCGTCTACTA CTGGATTTTC CACGGATGTC AGACTCCGTT GGTGGAGGTG
CTAATGTTTT TTTGTTGGGC ACTCTTGCCC TATTATGTTT GCGACGGTAT TGGCTGGTCC
GGCATTGTCT CTGTAGTAGC TGCCGGGTTC GTGATGGATT TGTACATCGT CGGTGACGAG
CATGGCGAGT CTGAGATCGG AGACACGAGA GAACCTTCGC CGAAAGTCGA GTCGGCTCGA
AAGCGTGGCC AGATCTTCTC GCCTATGGGA CAACTATCGA ATGAAGCCAA GACACATATT
GGCTTTGTCA CGGAAATCAT TTCGACGATG ATGGAGACTG CTATTTTTGC TTATCTGGGC
CTTTTCCTTT TCAGCCATCG TTATCACTGG AACATATGGC ACACCTTGAT CTCGATTACG
GCGTGTTGTC TTAGTCGCGG CATTATGATT CCGTGTCTGA GCTGGGTTGC CAATTTTATT
TTACGTATGC AACAAAATCG GCCGTCTTGT CGAATGCAGC AATCGGCAGG ACGAAAAAGC
CCGCAGTCGG CTGGTGTTGT TATAGATAAA AAGATGCAAC TGGTCTTGTG GTTTGCTGGG
CTACGTGGGG CAATGTCTTT TGCATTAGTC GAGCACATTC CGTTGTACGA TGAAGTCAGT
GGTATCGGAA CACGTCTCAA ACCGGAACTC AAGGCCATGA CTTCTGCGTG CATTATGTTT
ACGGTATTTG TTTTGGGGGG TCGTACCTAT CACATGATGG AATACTTGGG TATTGCACCC
TCCGCCAGCG CACGAAAACA ACAGCAGAAT CCGTCACCAC TTGAGTTGAC GGCACTTATG
ACGTCCAAGA GCTACGAAGA CTCAATGGAA ATTGAGGACG ACTCGAGTCG AACACCGTCA
AGGCCCGGTC ATGTCTTTCG AAGACAACGG CACAAAGAGC CGATGCCCGA AGGTGAATGA
|
|---|
| Protein sequence | MLHTPASPSG SVGSLKRDKE ETDFDFDHDE GFIIPLQMYS NTGSRMRNTA LTPPSRRKFP
WMWTMLVFLT LISIAFAFWS ELLEAFPTIT IHSNIANHER QSGVFPIQPV ASASRRGSGA
PVAVVVDTRE SAGEQQQTIM TTEAAAFPPP KLSGIPLHAA QALACRQSVI NFVINATDGK
DECEGLKKAF ERTCSNDGYE DSDSKDKAGR RKHRNMSEKL WDKSIPKVDR WHESVFYLSQ
TLRRIGDWLM WKEPAPFFLA EDEVATDETW QTARFLVKED LDRVVYRDIL HSWATLDCQI
RPELCQARVR RKLDESIESS FANDGNKEVQ HSNHTHSGGG LSLDLPFASG HVSEKVMGEA
LMLQQGDKLI EKATNHTSTN AAKSEAAASS KAVSDASAAV SAVLNDPSSI EARTCCASIL
NVYHDNCSTD VDDQVSDSRL FFVVFVMALC GMVKSLIRHF KILWLPEAAG CIIVGVLSGY
GMLLLPHHDI SFDGNWFLRI LVPPIIFEAA ISIDKRAFNR HIVPILIYAV AGTLVATVLT
ASILHRGTTM LSDWCYPIPY VEALAFGALI SSIDPIAVLS VLSNMGMTDT DTIYVVIFGE
SLLNDGVAIV LFHTLVHFLD ETLVIDRAAV IAAVIHFVVV AFGSFLIGVA SGMLCTVYYW
IFHGCQTPLV EVLMFFCWAL LPYYVCDGIG WSGIVSVVAA GFVMDLYIVG DEHGESEIGD
TREPSPKVES ARKRGQIFSP MGQLSNEAKT HIGFVTEIIS TMMETAIFAY LGLFLFSHRY
HWNIWHTLIS ITACCLSRGI MIPCLSWVAN FILRMQQNRP SCRMQQSAGR KSPQSAGVVI
DKKMQLVLWF AGLRGAMSFA LVEHIPLYDE VSGIGTRLKP ELKAMTSACI MFTVFVLGGR
TYHMMEYLGI APSASARKQQ QNPSPLELTA LMTSKSYEDS MEIEDDSSRT PSRPGHVFRR
QRHKEPMPEG E
|
|---|
| |