| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_43463 |
|---|
| Symbol | |
|---|
| ID | 7197171 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011670 |
|---|
| Strand | - |
|---|
| Start bp | 523748 |
|---|
| End bp | 525700 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | |
|---|
| GC content | 47% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002177953 |
|---|
| Protein GI | 219112403 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.117357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATTCCTCGTG GGAATTCAAT TTCTTCCAAA GTTTGTATTT TGCTTTAACC TTCCATATAT
TGGTATAAAC AGAAGCAATA GAAAGTTTTT GGCATCGGTG AAGGCGCCGT CACTGAAAAG
AAGCGATACT CGTCCGAGGA TAAGCGATAT GGTCGAAGAG GACAAAGTCA CCGACATCAA
GCAGTCCGTC AATAACATGT GGAATGGCGT GAAACGAGTA GGGATTGCCC CTCTTCTCCT
CACTTTCGGT ATCGGCTACC GCGTCGGTAT CCATGCTACT AGAGCTACTC TGCAACGGAC
GGTGTCATCT TCGGGTACTA TAGCCACCAA GTCGAATCCA CCATACGTAC TGGCCGCCGT
GCTAGTCGCC TTTGCGGCAC GTGAGCTCTG GAAAACTTTT CCAGACTGGA TCAAGCGACA
AATTCCATAT CTAAAAAGAA GGTACAAAGT AGAGGAAGTC GATTTTGACC CAGACGACAT
GACTTCCTTG CCGGCAATAG CTGCCAAGCT TCAATCATTG TTTGCGCTAG CACAAGAAAA
GGTTGTCGAC GCAGTAAGAG TTCCGAATCC TCAGCTTGCA TTCATTGCTC TTTTGAAGAT
CTTTGTACAG TTGAAAGATG AACGATCCCG GGATCGGGAT CGTCGGTACT CTGAAGCTGG
CAAGAACGTG GAGAATCCGA AGGATGTGCT TGAAGGCATG GACGATATGT TCGAGTTTGC
CGAATGGGCC TACGACGAAC TACCCGACGA AAAGCCTCTG AGTGAAGCGC TAAAAGAGAA
AGGCTTTACG TTGATCCGCC ACGACAAGGT TGCACTACCC GGGTCTGTTG CACACTACAT
AGCCATTTCG AAAGAACGCA AAGAAGCGTT AATTGGCATC AAGGGTTCAT CAAGTTTTGA
AGATCTACTG ACGGATTGCT GTATGCAAGC TCAATCATTT GATCTAAAGG AGCCGTTCAT
TAAAGGCGGC CCGACCGAGA TTCGAGCCCA CGAAGGAATT ATGTTGGCTT CAAAGCGTTT
GGCAGATGAA GTTGAGGTTC TAGTAGAGGA ATTGCTACTT CCAAGTAAAT ACAAACTAGT
CATAACAGGC CACAGCCTGG GGGCAAGCGC CGCCGCTCTG CTGGGAATGC TGCTTCGTTC
ACGTTTCGCT CAGCTTCGCC AGGAGAACAG TAACCTGTTG AAAGTTTGGG CTTTTGCTTC
TCCTCCAGTC CTGGACTATG ACGCAGCTTT AGCCTGTACT CCCTTCACAA CGACGATTGT
CAATAACTCA GACATCATCC CTCGATGGTC ACTCTCCAAT CTCCTGATTG TCATGGAGTA
CCTCAAAAAT GTTCACAACC GACTAGAGGA GCGCGGTATG ACCGCTAAAG ATTGGAAATC
AACGAAGTCT CTTTTTCACA TGTTAACTCA GAGCGAAGAA GAAGGTACTC CCATCATGAC
CATGGACGAG ATTCGAGCAG CGATGACAGC AGCCAACGCA AAAGTAGAAC TGAAAGATCC
TGACCATCTC TATGTTGCCG GTCGCGTTAT TCAAATGTAC GACTTGTGGT CAAAAGAAGG
ATACGGACAA GTGAGCGTCG CGGACAAAGA AGGTGCTCAT CCTTCGAAAC TATCAAACAA
CACAATCCCA GAAACGGAGA CGGAACAGAA TACTCGAACC GCCGAACGCG TCAATGTAGA
CAATGGCGCA TCAAGCATAC TGCGCTACAT TGAACTTGAC TCGCGCATGC TCACCGATCA
TCTTTCACCG GCATATCGAA GTAGTCTCAA CAATCTTCTT AGCTACGGGG CCGCCAAGAT
GGATGAGCTT GCCACAATTC CGGCAGAGTT ATCTGACTAA TAATTTCTTC AAAGTGGAAA
GTAAACCAAC AAGAATGCTT GTTCTCGTTA CCAAATAGAT TAAAAGGATT TTTCGGCAAG
GGAAAACTCA TAGAAAATGA TTTATCTGCT TTC
|
|---|
| Protein sequence | MVEEDKVTDI KQSVNNMWNG VKRVGIAPLL LTFGIGYRVG IHATRATLQR TVSSSGTIAT
KSNPPYVLAA VLVAFAAREL WKTFPDWIKR QIPYLKRRYK VEEVDFDPDD MTSLPAIAAK
LQSLFALAQE KVVDAVRVPN PQLAFIALLK IFVQLKDERS RDRDRRYSEA GKNVENPKDV
LEGMDDMFEF AEWAYDELPD EKPLSEALKE KGFTLIRHDK VALPGSVAHY IAISKERKEA
LIGIKGSSSF EDLLTDCCMQ AQSFDLKEPF IKGGPTEIRA HEGIMLASKR LADEVEVLVE
ELLLPSKYKL VITGHSLGAS AAALLGMLLR SRFAQLRQEN SNLLKVWAFA SPPVLDYDAA
LACTPFTTTI VNNSDIIPRW SLSNLLIVME YLKNVHNRLE ERGMTAKDWK STKSLFHMLT
QSEEEGTPIM TMDEIRAAMT AANAKVELKD PDHLYVAGRV IQMYDLWSKE GYGQVSVADK
EGAHPSKLSN NTIPETETEQ NTRTAERVNV DNGASSILRY IELDSRMLTD HLSPAYRSSL
NNLLSYGAAK MDELATIPAE LSD
|
|---|
| |