Gene PHATRDRAFT_42858 details

Gene Information

• Locus tag: PHATRDRAFT_42858
• ID: 7196447
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011669
• Strand: -
• Start bp: 1334860
• End bp: 1338398
• Gene Length: 3539 bp
• Protein Length: 1105 aa
• GC content: 53%
• Product: predicted protein
• Protein accession: XP_002177271
• Protein GI: 219111039

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAGTAAATCA TCCTCTACCA AGAATCAGTA CAGTGCCAAA GATCTCTCTG TAGCATTCCA 
AGCGAGCTCC TTCAACCTAT ACACAACTGC AGTTGTTGTT GTTAGATTGC ATTCACAAAC 
GCGAACGCGA ATAACAGCAT GGTGGATGGC CAACGGGAAG TCTCGTACCG CCCGACCCCG 
ACGGGCAGTC CGTCGCGTTC CGGACCTCCC AGTATGACGG TCCGAGCCCG TCGACGCCGC 
GAAGAATCCG TACGTCGTTT GGTTGCCGAT ATGCAAGCTC GTCGAGGAGA AGACGAAACG 
CACGAATGGT TGGTCGCTTC CACAATCGCG ACGGCCCTAG AACAAGGATT GGACCGAGAG 
TTGCACACGG AATTGGTGCA AGAAACAAAA GACAACGCCT CCCGGATTGG CCAAATCTGT 
CACGATCACG CCAACGTCTT CCTCTCCAGT GTTGCTCAAG TAGCGGCTTT GGGCGAGCCT 
TCGGCGCAGC TGGCGCAGGG ATTAGAAGAA GCTTACCAGA CGCTGGAATC GCAAACGGCC 
GGACCCCTGC AACAAGCCGT GGATCAACAC AAACAAGCCC ACAAATCCCT GACGCAGGCC 
AAAGCACTTT CGGAAACGCT CGTGGCTTGT CAGCTTCTCG CGACGCAACT CGAAAAAGCC 
CGTAAACAGG CGTTGCTGGG ACGTCCCCGG GCCGCACTGG CGGCCGTCGA TCAAGCCCGC 
ACCGTTCTAA CACAACCACT CCTCGTGGAC GCGAGTTTGA ATCAAAATAA AGAAACACGA 
TTGACGCTGG AACAAACCCC GCTTGGGCGT CGCGCCCAAA TTGTTCTACC CAAGCTCGAA 
ACCGAAGTCC TGCAAGCCGC TCGGCGGGCC TGGAATCGTT GGTGGGTACA ACTCCGCAAT 
GGCGAACAAG CGAAGGCTGG TAAGGCTGTA CTCCGACAGG TGGGTCACGC CGTTGCCACG 
GGTCCGTCGC AGCTAAGTCT TGGGGGTAAT CTGCCCTCGA GCTACGTCTG GCGGGCCCAG 
ACTGCTCATA ATCTCGTATC TCGGGTGGAT CAGAAAACGT CCGTCGCCCG CGCGGCACGG 
GCGGCCTACT GGTTGGACCG GGACGCCGCT AAGGAAGCGC AACGCATCGC CACAATCACT 
TCTCACGGAC TAGCCCGCAA ACTCGAATCG ATCGCCGCCT GTCTCGGATG GTACCGTTGC 
TGGGATGCCT CGGCTTCGCT GCTTTTGGAT TTGTCGGAGT TCAACGGGAC GGACGCGGAA 
GGCAACTTGT TGGTGGGGAG TGGCTCTCGA CACGGATCCC GACACGGATT GGCGGGATCG 
CGTCACGGTT TGCGGGGGTC ACGACACGGA AAAGCCCGAT CGCTGGGTTT TCGGTCCACA 
GCGTCGCGCT CCCAAACTAC CGCTCCGAGC ACGCTGAGTG GTGCTGCGTC AGGGACCAAT 
GTGGCTACCG GCAAATGGGC CGAAGTATTG CTTCCGGCAG TGTTACTTTC GCAAACACCC 
TCCCGGTATG TCTCTCCTAT ACAATTGCTG ATGCGCGATG CTTTCTCTTT TTGTTTGCTA 
ACTCGATGCG ATATTACTAT AAAAATAGCC GTGAGGAAGA CGAAATCCTC ATGTCCCTTC 
CTGAATCGGT ACACCCTGTA AGACGGGCAG AATTAGCGTA TCGTCTCTTG GGTCGGACGG 
ACGAGTTTGT GCAGTACTAT GAACAGAATC GCTTTAATGG TGGTGCCGAG GACGCAGAAA 
GCGAGCGATC GGCACTCTCT GCGCTTACAG GCGACGACAT CACCTTGGGA TCTGATCGTA 
CGTTCTTCAG CAAGACCCTA CCAACCTTGT GCGCTTCGAT TGTCGGATTT ACCGCCGTCG 
AAGCGGCCTT GGAAGTCGGG ACGTTCGCTG GAGATGAAGA GGAAAACACT GAAGAAAGCA 
AAGAATCACG AGCGTTTGCC GCGGTTTCTC GTTCGCCTGC TGCAGCGACA GGTAGCACGA 
CCTTGACAGC CAGTCGACTA CGGGAATCTT CCGAACGCTA TGAACGAGCC CTGACGAGCG 
AGCTGGGTGA TTTGATTCGC GAGCGTGCCA AGCGTAGCAA TCTAGGTGAA CTGGTCCGCT 
CCTCAATTCT CATGTCGAGC TTCCGTTCAT CTCTCAAAGT AGTCCATCCG AGTTCGTCTT 
CCCGTCGGCA CGACAAGGAC CTACTGGCTT TGGACACGGA AATCCTCCTA AGAGCCCTCA 
AAATTTCGCA AGATGAACAG CTCCGCGCAA CTACTGCAAT TGTGGCGGAG GATCGCAAGG 
TCCCCATGCT AGTAGCGGAT TCTTCTGCTG CTCAAAAAGG AAGATCCATG CAGCAACCCA 
CATCGGGAAT CCCCGACCCC GAAGAAATTG GCTTGCCTTT TGGTTTGAAC CAAATGAAGC 
AGCAACCTAC AAAATCCAGT TTGCAGTTTC AAGAACAATC TCAAGCATCT TTCAATCGAT 
CGGCCGTCGA CCAAGCTTAC ACCTTTTCCG ACTCCTTACC TACTGTGATT CGGTCCTTGC 
ACGCCCGAGC CATTGCTATG GTTGTATTTG CTCTGAGTCA GGAGGAGTTG GGTCAATCCT 
TTTCTGCAAA GAAGGGAAGT AATGCGGCCG GATACGTCTT GGATGCCATT GGCGAGTTTG 
TCAACGTGAC ATCTGTTGGC ATGAAGGACA GTGATAATGT CGTGGACGAA GGATCCGTCG 
AAAAGGCCGT ACAAATTATG GCCAATATTG CTGCTCTGCA GCATTGTCTT CCTCGCTTTC 
TAGGTACTAT TCTCCGAGGC ATGTGTCATA TAGGAATGAT TAAAGCTGAG GAATTGGACG 
AAACGTTTGT GTACGCTGAA ATGACGCTCA AGTCAGCTGA CAAAGCTTGC GACGCGCAGA 
TGGGTAGCAC GTACAGTTTG GTCTATGAGA TTTGCCGTAA CAAGATTGAT TCGCACATCA 
ACTATGCCTT GGAAAACTTC AACTGGGTCG CAAAATCGGT GCGTGATATG CCGAACGCCT 
ATTGCGAAGG GCTGATCGGG TACATGCGAT CCGTTTTCAA TTCGTTGGGT CCAATGGACG 
AAGGATCTAG GGCTGGACTC CATTTTTCAT GCTGTGGTCA TGTTTCGGAA CGTCTTGTCA 
AGTTGTTAGC TGGAAAACCC GGTGATACCG CCACATTCGA CGACTCTGGT CTACCGCCAA 
TCGCACGCAT TGATGCCTTT GGTATAAAAA ATTTGGCGTT GGACTGCGAT GAGTTGGAAA 
AGTTTGCCGA TTCAACGGCC ATTCCTCAGT TGCGCGACTG TTTCAACGAG CTTCGAGTGC 
TGACTTCTGT GATGCTGGAC AAGGACCTTC CTATGCTTGT TATGCCAGAG AATGTAGCTC 
AACGTCGACG AAAATACCCT ATTCTGAGTA TGGACAAGGT TGGTAACATT TTGGAAAAGT 
ACGTAGGCAC TGGGTTGGGT GACAAACTTA TGGGAGGCTC TCGCAAAGTG GATATTCTTT 
TTATTGACAA AAAAGAAGTT CAACAACTGA TCAAAATTGT GCGATCACAG GGTATTTAA 

 

Protein sequence

MVDGQREVSY RPTPTGSPSR SGPPSMTVRA RRRREESVRR LVADMQARRG EDETHEWLVA 
STIATALEQG LDRELHTELV QETKDNASRI GQICHDHANV FLSSVAQVAA LGEPSAQLAQ 
GLEEAYQTLE SQTAGPLQQA VDQHKQAHKS LTQAKALSET LVACQLLATQ LEKARKQALL 
GRPRAALAAV DQARTVLTQP LLVDASLNQN KETRLTLEQT PLGRRAQIVL PKLETEVLQA 
ARRAWNRWWV QLRNGEQAKA GKAVLRQVGH AVATGPSQLS LGGNLPSSYV WRAQTAHNLV 
SRVDQKTSVA RAARAAYWLD RDAAKEAQRI ATITSHGLAR KLESIAACLG WYRCWDASAS 
LLLDLSEFNG TDAEGNLLVG SGSRHGSRHG LAGSRHGLRG SRHGKARSLG FRSTASRSQT 
TAPSTLSGAA SGTNVATGKW AEVLLPAVLL SQTPSRREED EILMSLPESV HPVRRAELAY 
RLLGRTDEFV QYYEQNRFNG GAEDAESERS ALSALTGDDI TLGSDRTFFS KTLPTLCASI 
VGFTAVEAAL EVGTFAGDEE ENTEESKESR AFAAVSRSPA AATGSTTLTA SRLRESSERY 
ERALTSELGD LIRERAKRSN LGELVRSSIL MSSFRSSLKV VHPSSSSRRH DKDLLALDTE 
ILLRALKISQ DEQLRATTAI VAEDRKVPML VADSSAAQKG RSMQQPTSGI PDPEEIGLPF 
GLNQMKQQPT KSSLQFQEQS QASFNRSAVD QAYTFSDSLP TVIRSLHARA IAMVVFALSQ 
EELGQSFSAK KGSNAAGYVL DAIGEFVNVT SVGMKDSDNV VDEGSVEKAV QIMANIAALQ 
HCLPRFLGTI LRGMCHIGMI KAEELDETFV YAEMTLKSAD KACDAQMGST YSLVYEICRN 
KIDSHINYAL ENFNWVAKSV RDMPNAYCEG LIGYMRSVFN SLGPMDEGSR AGLHFSCCGH 
VSERLVKLLA GKPGDTATFD DSGLPPIARI DAFGIKNLAL DCDELEKFAD STAIPQLRDC 
FNELRVLTSV MLDKDLPMLV MPENVAQRRR KYPILSMDKV GNILEKYVGT GLGDKLMGGS 
RKVDILFIDK KEVQQLIKIV RSQGI