| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_42779 |
|---|
| Symbol | |
|---|
| ID | 7196401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011669 |
|---|
| Strand | + |
|---|
| Start bp | 1090785 |
|---|
| End bp | 1092657 |
|---|
| Gene Length | 1873 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | |
|---|
| GC content | 45% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002176721 |
|---|
| Protein GI | 219109937 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0527893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TAGAGCCGTT CAAGATTGAG AGTATAGAAA TCGGAAAGCC CCGCAAGAAA TATCGCTTTT
GCCTCCTATG AACTCACTCT TCTAACTTTG AAAGGATCTC ATTGTGCTGA CTGATAAATG
TGTATTTCAG TCGAAAAACC TATGGTTGCC GACGGCAACA GAAGTTCCCG ATCTTCGTTT
TTTGAAACGC CGATTCTACG GCTTCGATAC TCCGTGGTGG GACCGGCTTT GACGATCGAC
GCACAAGTCT TGTTGGCTCT TGTATTGATA GCAGCGTATC TTTCTAATTG CTTGCAGGAG
GAGCGTGTTT CCTTTCTTAA TAATTTCTGG ACAATACGAA CGATTCTGCA GCAGGAAAGT
CTCAGGGCTG TAATTTTCGT ATTTTCAATG TTTGCTTTTG GGCGGAAATG GTTTGGTTCT
TTGCTAGGAG CTCAAAAATT GGCTCAAACA GGTTCATCGG CTCTGAAGAG CGTTGCTTCA
AACGGAACCA TCGTGAGAAT CCGTAGTTCC ATGTCGATGT CTGTCATATC GGACCGGCTA
ATGTCGATGA ACGGCAAGTC GACCTCGCAC AGGGCTTCTC TGTCACTGTC AGACAAAACG
TGCTTTGCTC AATTGAAGGA TATTGAGAAA CTGTCGGTAA AGGATATGGG GAGCATTTTT
CGCTACGCAA TACAATACAA TATATGGACT GACGCTCAAC TTAAAGCCTT TCTTTCAGAA
ATTCGGGTCC AGGCCTTGTC CGTTGTTACC GCAATTGATC ACGCGCTTCC CCCCTTACAT
CGTGCGTCAA TGGTGCAAGA ACCAAACGCG CAGAGTAGCA GTCCTAGGAA CTTTGGAGAT
ATGGACGTAC TCCTGTTTTC AGCAGCCGTT CGAGTATTTG CGGAATGGAG ACTTCTTCGC
CTTACCCCAG CAGGATATCG AAATTACGCA CTTGGGATGG CGCTGACACG TCGCGATTTG
GTGCAAAATA TTGGAAAGAT AGAAGCTGCT GTACATGAGC TATTGGAAAG CCAAACTTCT
CACAACGGAG TCAATTCTAT TAGACCTACA ATTTGGCAAT TGCTGGATTA CGAAGTACAG
CGTGGTGTGC ACCCAAAGCT ACCTTATTTG GTCGAGAAAT CGGGTGCGTC GGGTATCCTT
TGGATCATGC GGCAACTGAG TTTCCAGGTG AATTCATTTG AATACATTTC TAAGGTACCA
ACAGCGTTTC CGTCATTCAA GATAGCCGTT CGCTCAGCAT ATGATCGAGT TTATGGCGAC
TATCATGGAT TCTTCTTAAA GCAAATTTTT TGGAATTCGT TCAAATCGGC TCCGGAAGCT
AGCGTAATTC TGAAGTTTAT GGAGGAAACC GAAGAAATTA TGTCCAGAGA TCTGTCTCCA
TCGAATTCAT CCGAAAAGGC CACTGTTCTA ACAAGAGATG CTGTTTGTGA TAACATACAA
TCTCCTCAAG AGCGGAATCA TTTTATTGGC ATGTTTCTCG AAGTGCAGCA GTTTCTTAAG
CAGTGTCACG GGGGGCACCC AAAAGTAAGG CCACCAGCAG TCGACACATC ACTTCATGGC
CCTGAACATA TTGGACAAAA GGGAGGGGAT CTCACCGCTT TTCTTCTCGA AATGCACCCG
CTAATATCAG GACTTGATGG CCTGATTGGA CACTTCAATA TGAAAGATCC CTCTAAAGTT
TAGCCGCCGG AGAGCCTGTA CCTCCTCTAA TCCCATTTAT TTACTTGAAG CTAGCAGGGA
CATAGATACC GGCAACTTCA TCCTTGTAAG ATGATTTAGT AAAAGGCCAA ATTGTTTACA
GTCAGCAATT TGAAAGTGTG TTGGCCTACC GCATTTTCGG GGACACTAAC AAAAACAGTT
GTTGTAACAC CGT
|
|---|
| Protein sequence | MCISVEKPMV ADGNRSSRSS FFETPILRLR YSVVGPALTI DAQVLLALVL IAAYLSNCLQ
EERVSFLNNF WTIRTILQQE SLRAVIFVFS MFAFGRKWFG SLLGAQKLAQ TGSSALKSVA
SNGTIVRIRS SMSMSVISDR LMSMNGKSTS HRASLSLSDK TCFAQLKDIE KLSVKDMGSI
FRYAIQYNIW TDAQLKAFLS EIRVQALSVV TAIDHALPPL HRASMVQEPN AQSSSPRNFG
DMDVLLFSAA VRVFAEWRLL RLTPAGYRNY ALGMALTRRD LVQNIGKIEA AVHELLESQT
SHNGVNSIRP TIWQLLDYEV QRGVHPKLPY LVEKSGASGI LWIMRQLSFQ VNSFEYISKV
PTAFPSFKIA VRSAYDRVYG DYHGFFLKQI FWNSFKSAPE ASVILKFMEE TEEIMSRDLS
PSNSSEKATV LTRDAVCDNI QSPQERNHFI GMFLEVQQFL KQCHGGHPKV RPPAVDTSLH
GPEHIGQKGG DLTAFLLEMH PLISGLDGLI GHFNMKDPSK V
|
|---|
| |