Gene PHATRDRAFT_42600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPHATRDRAFT_42600 
Symbol 
ID7195968 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism namePhaeodactylum tricornutum CCAP 1055/1 
KingdomEukaryota 
Replicon accessionNC_011669 
Strand
Start bp549824 
End bp550956 
Gene Length1133 bp 
Protein Length319 aa 
Translation table 
GC content47% 
IMG OID 
Productpredicted protein 
Protein accessionXP_002177107 
Protein GI219110711 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.997663 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CAATTTGCAA AAGAAGGTAG AGATGGAATC CTAAAAGTAC CTCACGATAC GGATTGGATG 
CCAGTTATGC GTCGAACACC GGTACGTAGA TTGAAACCGA GAACTTGTGT TTTTCATCTA
GTCGGAGATG GTATTGCTTT CCAAGAAAAC TTTTGTGAAA CGGTCTACCA TACGTGTCAC
GGTAAAGAAT TCGCTCGCGG CAATTTCCGC CACATTGATG CTGTTGGTGG CCTTTCAATT
ACAGTTTAAG CTGCCTGTCC TCCATGAAGA TGCAGCCGAT GTTGATGTAG AGTCTGATGT
GTGGTACGAT GGAAATGAAG TGCCTCCTAT CCTTTACTTC ATTCACACAA AAATGGATAT
CTTGGCAGAC CAGAAACCAG TACTATTCTA CGAAAACATT CAAAGGACAG TCCGTCAATA
CGAAAGGGCT TGGGGCAAAA CCAATCTCGA TGTGAGATTT CTTACTTTCG AATCGTGCCG
GGAATTGGTC AGACACGCCG CCCCCGATCT ACTGCCACAC TTTGATTCTG ATCCAGAAGG
TCGAAATCAC GCCACTATTT GTCGGGTCGC GGCTCTATAT GTCACGGGCG GGTACTACTT
CGACGTCGAC ATGCTCACGC AACGAGCCTG GCTCCCTAGA GGTTGCTCGT TGGCTACGGC
TTTCAATCCC TGGAACAACA TCATGCAGAG TATTCTGATA GCTCAGCCGG CTCACCCTCT
ACTGAAAGAA ACTTTTCGTG TTATGCTTGT TCACTATGAA GAATATGAGA AGATGTCGGA
AGGTATTGAG CGTACCAGCT TTCATTTCAA CCTTGGTACC AAAACTCTTC GAATTGCCTA
CGACAATCTT CACTACCAAG CGCCTCCACG CTGTTTTCTG CGGGAATCGA AGCTTAATCC
ACCTTCGGGT CCGCGGATCT TTCCCGACCT CCCGCTGCAA AAAGGTGCCT TTGGGGGAGG
TTGTAATTTT GTGATTCACA ACGACAATGA GGTGTTCTTC TATAGTCGGA TCGTCGGTGC
GGGCAGAACA TGCCGCTTCA CTCAAGAAAA ACTGTAGTTT GGAAAACGAG ATAACGGCTA
GCTACTCTAG AGACAGAGAA AGAGATTGAA TTAATGTGAG CACCTGATAT CAG
 
Protein sequence
MPVMRRTPSE MVLLSKKTFV KRSTIRVTVK NSLAAISATL MLLVAFQLQF KLPVLHEDAA 
DVDVESDVWY DGNEVPPILY FIHTKMDILA DQKPVLFYEN IQRTVRQYER AWGKTNLDVR
FLTFESCREL VRHAAPDLLP HFDSDPEGRN HATICRVAAL YVTGGYYFDV DMLTQRAWLP
RGCSLATAFN PWNNIMQSIL IAQPAHPLLK ETFRVMLVHY EEYEKMSEGI ERTSFHFNLG
TKTLRIAYDN LHYQAPPRCF LRESKLNPPS GPRIFPDLPL QKGAFGGGCN FVIHNDNEVF
FYSRIVGAGR TCRFTQEKL