| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_29502 |
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| Symbol | DDB1 |
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| ID | 7203571 |
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| Type | CDS |
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| Is gene spliced | Yes |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011685 |
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| Strand | - |
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| Start bp | 229215 |
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| End bp | 233824 |
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| Gene Length | 4610 bp |
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| Protein Length | 1284 aa |
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| Translation table | |
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| GC content | 51% |
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| IMG OID | |
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| Product | damage-specific DNA binding protein 1 |
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| Protein accession | XP_002182922 |
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| Protein GI | 219125301 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GCATCTTTGG CGATTGTCTC TCTTCGACTG TCTGTCCATG AGTGCTTCTA CCAAGAAGGA
AGCGGCGCAC TACGTGGTGA CCGCACATCC GCCGGGAGGG GTTTTGTTGA CGGCGAAATG
CAACTTTACG TCACCCTTTT CGCTAGTGAG TATGATGCTG CTCGTGCTCG TGTTACTTTC
CAGCAATCGT GCGCTATTGT TTCCTGGTCC AGTAACAATC AAAACCTACG CCATGTATTG
TATGCTCTGT ACCTAATCGG AAACAATTTC TTTTTTTTCT CGTTCGGCAG GACGTATTGG
TCGCCAAATC GCGCCGTCTC GAAGTCCGTC AGCTGCGCAC GACGACGGAA GGGCTTTCAC
CCTTTCCTAT CCTCGCCAGT GTCCCCATTA ACGGTCGCAT TGTGGGTCTC GTCCCCTTCA
AGGTTCACGG TAGTGACACA TCCTACGTAT TCGTGCTGAC GGCGCGGCAG CAATACGCGG
TCCTCGCCTA CGATCGAACG AACAGCGGGT CTGCGGCCTA TCCCCTCGTG ACCCTGGCTT
CGGGAACCTT GCAGAGTCAG GAACACGCAG TTTTGGGACA AGAAGCGGAA TCGGGACCAA
TCGTAGCGAT TGATCATTTT CACCGTTGTA TTGCGCTACA CGTCTATGAT GGTCTCCTCA
CGATCATTCC CGTGAATTTG GAATACATGC GTCCGAAACC TTCCAAGCAA GACGAGACGT
CGACGTCGAC CCAGAGTACC CGTACACTCG CGTCGCAACA GCTTTTGGGG ACGCCATTTC
ATTGCCGTAT CGAAGAACGT ACCATTCTGC ACCTGGCCTT TTTGCAAATA CCCTTCGAAG
CCTTGCCCCA ACTAGCAGTC TTGCACCAGG ATGCTCGCGG GGCACAGCAC ATCACGTCGC
ACGTCATCAA TTGGAAACGC AAAAATATAT TTCTGTACGG ATCCTCCTCG GCACCGGCTG
CTACCGAATG GTTACAAAAA TCCAACGTCG ATGGCGGATC GTCGTTGATT ATCCCCGTCC
CGTTGCCGCC CAAGACGGTG GCGGCCGCGG CCGCTCCCGC AGCGAGCGCG GAAGCCCCAC
CGGATTTCGC TCCCGCCAAA CATCGTTCTG GCGGAGTGCT GGTGGTAGGT CAACGCCAAC
TTACCTTTAT CAATAACAAT GTAACCAAGG TCGTGCCTAT TCCACAGGCA CTCCATCTGT
GTGTGGAAGA ATTGCCCGCC GATCCCAACG GTGGCTTGCC CCGATACTTA CTGGCCGATG
AGTTTGGCAA TCTGCACATG GTCACCATTG TGCTCGTGGT CGATAAGGTC GTGGCACTCC
AAATAGACAC GTTGGGTTCC TGTACATTGG CAACGTCTAT CGCCTATTTA CGGGAAGGTC
TCGTCTTTGT TGGGTCCACC TTGGGCGATC CGCAGCTTAT TCAAATACAC GACGAGCCCA
TTGTCGACGT CGAAGACGAA GAAGACATGG TTGGAGCCGA ATCATCCTAC CTCAGTGTAG
TGGAAGAGTA TACGCATCTC GGACCCATTT TAGATTTTGA TCTCGTTCCG ACTGCTCCGG
GCGGTGGTGG GCTTGGCCAG ACTGAGGGAA TTCACGGTCC GTCTCAATCC CAAGTCGTGA
CAGCGTCGGG TTCATCCAAA TCGGGTTCAC TCCGTTTAAT TCGTAACGGA ATTGGCATGA
ATGAATCAGC GGCGGTCGAA ATTCCCGGCA TACAAAACGT ATGGAGCTTG CGACGATCGT
TTGCCGATGT TGACGATACG TATCTGGTAC AATCGTTCGT GCACGAAACA CGCGTACTAG
GAGTGACGAC AATGGATGAC ATGTCTCAAG ACGAGAAAGA AGGCGATGTT GCTCCGGGAG
GCACTCTGGA AGAAGTTTTT CTTATCGGCC TGAAGTCATC CTGTGCAACG CTATACGTCG
GTAACGTCCA AGCGCACCAG AATGGTCTGC TTCAAATCAC AGAAGGGGAA GTGCGATTCG
CCACAATGGA GGCCGTGTTG GACACGTGGC TCGTCCCATC CGGGGCGGCC ATTACTGTGG
GCACAGCCAA CGAAGCTGGA CAAATAGCAG TTGCCCTCAA TGGCGGAAAG GTGCTTTATT
TGAAGATAGA AGAAGGGAAG ATCCGGGAAT GTTCGGGGCA GCAAATGGAA CGCGAAGTCA
GTTGTTTGAA CTTGAATCCC TTTGCTGCGT CGGACGCCAT GGATGTGGAC AATGACGTAA
GAAAAAGCAC ATCACACACG AGCAGTTTTC TAGCCGTCGG CTTGTGGGAC GATTTCACGG
TCCGTCTCTT GTCGCTAGAC GATGGATTGG AAGAGCTCCT CAAGATACAT CTAAGTACGG
ACGAAGACGA GGATTTGGTC AGCGACACCA CAAGCTCCTT GGCGAGTCCG TCTCATAGAA
ATCGGAACAA CATGATGGCA CGTAGCCTCT GTTTGATAAC GTTGGACTTT TCCAGCGGCA
CATCCGGCAA TACCACATCA ACATCAACTT CACTTTCGTC CACTGGTTCT GGTGTGAATA
TGTTGTTTGT TGGTCTCGGA GACGGTACAC TGATTTCGTT TGCGGTTGTC GAACGGGGTG
CATCAATTTT CGTGCAGTCA AAGAAAGAAG TCTGTTTAGG AACGCAGCGA ATCGATCTCG
TTCCATTATG TACTGAGCAG GGCGGAACGT GCGTCCTAGC GACTGGAGAT CGTCCTACAG
TTATCTACTT GGCAGGTGTC GGTGGAATTT CTGCAAACCA GTTCAATCCA AAGCTATGCT
ATTCCAACGT CAACCTCTCA GCCGGTGACG ACGAGGAGGA AGACGATGTC AGCCGACCTC
CTTCGCAGCA AAGTATTGTG GTCAATGTTG CGACACCATT CTCGTCATCA CTATTGTTCG
ATTCGGCAAC TGGCGGAAGT CAACGCTATT CGTTGTGCGT GGCGGACGAT TCGTTTCTGC
GTATGGGGAT CATTGACGAC ATTCAAAAGC TTCACGTCAC AACTTGTCGA CTAGGAATGG
CTCCCTGTCG AATCGTTCAT TGTGCCGACG GTCGATTGTT CGCCGTAGGC TGTATCGAAA
GCGGTATCAA GCAATTCAGT TTGGGTGGGG ACGAGGCGAA CATGGGCAAC TGCATTCGTT
TTATGGATGA CGCCAATTTC GATGATATCC ATCGAGTGGA TCTCGAACCA TTTGAAATGA
TATTGTCAAT GGTGTACGCC ACGCTACGGA TTCCGTCTGA CGGAGATCAA TCGGACCAAC
CCGTACATAG GCCGTTTTTG CTGGTTGGTA CCGCATACGC AATGCCAGAC GAAGATGAGC
CAAGTCGTGG TCGCATTCTT GTCTATTCTT GCCAAGCGGA CGAGGCTTCC GGGACGCCAA
CCAGCACACG TGCAGTGCGA CAGATTACGG AAATGTCGAC GCAAGGCGGT GTCTACAGTA
TTTGCCAGTT CTACGACGGC AATTTTTTGT GTACTGTCAA TTCCAAAACA CATGTTGTGC
AGATTGTTGC GGATTGTGGT GTCTTGCGGC TAGAGTACGT GGGAATCGGG CACCATGGAC
ACATAGTGAG CTTGTTTGTG AAAAGCCGAG CGAAACCTGT GACGGACAAT AGTCCATCTT
TGGCAAACCC AATGACTATG GGTGAGGGCA CCAAAGACAA TATTCCTTCT GGAGCAAACA
TCAAACAAGA TCCAGAAGAA AAGCTGGCAA TTGTGGGAGA CTTGATGAGG TCAGTTAGCT
TAATGCAGTA CTACCCTCAA CATGAAACTC TTGAGGAAGT TGCGCGAGAC TTCAACCCAA
ACTGGACGAC CGCGGTGGAA ATGCTTACGG ACGACGTGTA CATTGGTGCC GAAAACTGGA
ACAATCTTTT CTGCCTTCGA CGCAACAAGG CTGCTACCAG TGAAGAGATT CGCTGTCGAT
TGGATAACAT TGGAGAGTTT CACCTAGGAG AAATGTGCAA CAAATTTATG AGTGGCAGTC
TTGTCATGCC GGTCTCTTCC AACTCCACCA CATCAAGCCG GAGGGCCGTG CGAAGGACAA
CCACTCCCCA GAAGAAGAAA GTCTCTGACT CTTCTGCTAA AGCTAGCTCT CCGGCTAGAG
TTTGTCGCCC TGTTGTGATA ACTGGAAGTC AGACTTTGTT CGGAACAGTA GAAGGCTCTC
TAGGGGTTAT CCTGGGCTTG GACGGGAGAA CTGCTGCTTT CTTTATCACG CTGGAAAGAG
CAATTGCCAA AACGATTCAG CCTGTGGGCG GTTTCTCTCA TCAGCTATAC AGATCTTGCC
AAGCTGAGCT CCGTGTTCAT CCCGCGCATG GTTTTGTTGA TGGCGATCTA GTTGAGACAT
TTTTGGATTT GGATCGAAGG ACGATGGAGG CAGTTGTGGC TGAAATGAAT CGGGACGGCG
GGTGGGAAGT GGATGATTTC GCGAACTCAA GGTCTGACGA GAACAATGAT AGTTCCAAGG
ACACCGACAG GATCAACCTC GAAGAGCGAT CCGAGCTGTC TATTGACGAC GTTTTAGCGA
TGGTAGAGGA GATGACAATG CTTCATTGAG TACTACAACA AGTTATGCGA TCTATACCTA
CCTATACATT ATAGCGTGTT GTGCGGCCCT TGAGATGCAA AAGAAGGGTC
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| Protein sequence | MSASTKKEAA HYVVTAHPPG GVLLTAKCNF TSPFSLDVLV AKSRRLEVRQ LRTTTEGLSP
FPILASVPIN GRIVGLVPFK VHGSDTSYVF VLTARQQYAV LAYDRTNSGS AAYPLVTLAS
GTLQSQEHAV LGQEAESGPI VAIDHFHRCI ALHVYDGLLT IIPSTRTLAS QQLLGTPFHC
RIEERTILHL AFLQIPFEAL PQLAVLHQDA RGAQHITSHV INWKRKNIFL YGSSSAPAAT
EWLQKSNVDG GSSLIIPVPA EAPPDFAPAK HRSGGVLVVG QRQLTFINNN VTKVVPIPQA
LHLCVEELPA DPNGGLPRYL LADEFGNLHM VTIVLVVDKV VALQIDTLGS CTLATSIAYL
REGLVFVGST LGDPQLIQIH DEPIVDVEDE EDMVGAESSY LSVVEEYTHL GPILDFDLVP
TAPGGGGLGQ TEGIHGPSQS QVVTASGSSK SGSLRLIRNG IGMNESAAVE IPGIQNVWSL
RRSFADVDDT YLVQSFVHET RVLGVTTMDD MSQDEKEGDV APGGTLEEVF LIGLKSSCAT
LYVGNVQAHQ NGLLQITEGE VRFATMEAVL DTWLVPSGAA ITVGTANEAG QIAVALNGGK
VLYLKIEEGK IRECSGQQME REVSCLNLNP FAATSHTSSF LAVGLWDDFT VRLFLCLITL
DFSSGTSGNT TSTSTSLSST GSGVNMLFVG LGDGTLISFA VVERGASIFV QSKKEVCLGT
QRIDLVPLCT EQGGTCVLAT GDRPTVIYLA GVGGISANQF NPKLCYSNVN LSAGDDEEED
DVSRPPSQQS IVVNVATPFS SSLLFDSATG GSQRYSLCVA DDSFLRMGII DDIQKLHVTT
CRLGMAPCRI VHCADGRLFA VGCIESGIKQ FSLGGDEANM GNCIRFMDDA NFDDIHRVDL
EPFEMILSMV YATLRIPSDG DQSDQPVHRP FLLVGTAYAM PDEDEPSRGR ILVYSCQADE
ASGTPTSTRA VRQITEMSTQ GGVYSICQFY DGNFLCTVNS KTHVVQIVAD CGVLRLEYVG
IGHHGHIVSL FVKSRAKPLA IVGDLMRSVS LMQYYPQHET LEEVARDFNP NWTTAVEMLT
DDVYIGAENW NNLFCLRRNK AATSEEIRCR LDNIGEFHLG EMCNKFMSGS LVMPVSSNST
TSSRRATLFG TVEGSLGVIL GLDGRTAAFF ITLERAIAKT IQPVGGFSHQ LYRSCQAELR
VHPAHGFVDG DLVETFLDLD RRTMEAVVAE MNRDGGWEVD DFANSRSDEN NDSSKDTDRI
NLEERSELSI DDVLAMVEEM TMLH
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