Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_25172 |
Symbol | Lhcf2 |
ID | 7197087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011670 |
Strand | - |
Start bp | 135837 |
End bp | 136579 |
Gene Length | 743 bp |
Protein Length | 198 aa |
Translation table | |
GC content | 52% |
IMG OID | |
Product | protein fucoxanthin chlorophyll a/c protein |
Protein accession | XP_002177870 |
Protein GI | 219112237 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.992243 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTCGCGGTTG CCAGAAGTCA AGATGAAGTT TACCGTGTTT GCCTCCCTCT TCGCGTCCGC TGCTGCCTTT GCTCCGGCTC AGCAGGCTGC CCGCACTTCG GTCGCCACGA ACATGGCGTT CGAGAGCGAA CTTGGTGCTC AAGCACCGCT TGGATTCTAC GATCCTCTCG GCCTTGTTGC TGACGGTGAC CAGGAAAAGT TCGACCGTCT CCGTTACGTT GAAATCAAGC ACGGACGCAT CTCGATGCTT GCCGTTGCTG GATACTTGGC ACAGGAAGCC GGATGGCGCC TCGGCGGAGA CATCGCCCTC GATGGAACGA AATTCGCCGA TATCCCCAAT GGATTTGCTG CCTTGAGCGC AATCCCGCAG GCTGGGCTTA TCCAGATCAT CGCCTTCATT GGTTTCTTGG AGACCTCTGT CATGAAAGAC ATCACTGGAG GAGAATTCGT CGGTGACTTC CGTAACGGAT ATATTGACTT TGGATGGGAC TCCTTCGACC AAGAGACCAA GCTTCGCAAG CGTGCCATTG AGCTTAACCA GGGACGTGCC GCTCAGATGG GAATTCTTGC CCTTATGGTC CACGAACAGT TGGGAGTCAA CATCCTCCCA GGTGTTTAAT TTACTTGCTG GGTTAGGCCG TTTCTGGAAT AACATATTAG ATTCTAACTG GTTCGAAGCA TTGCGTTGCT GTAACATTCC CGTTCACAAA AATACAGAAC AGTCTAGAAG TTCGCGACGA CAT
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Protein sequence | MKFTVFASLF ASAAAFAPAQ QAARTSVATN MAFESELGAQ APLGFYDPLG LVADGDQEKF DRLRYVEIKH GRISMLAVAG YLAQEAGWRL GGDIALDGTK FADIPNGFAA LSAIPQAGLI QIIAFIGFLE TSVMKDITGG EFVGDFRNGY IDFGWDSFDQ ETKLRKRAIE LNQGRAAQMG ILALMVHEQL GVNILPGV
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