Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_24865 |
Symbol | RPN5 |
ID | 7196815 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011669 |
Strand | + |
Start bp | 1758116 |
End bp | 1759878 |
Gene Length | 1763 bp |
Protein Length | 457 aa |
Translation table | |
GC content | 49% |
IMG OID | |
Product | regulatory proteasome non-atpase subunit 5 |
Protein accession | XP_002176845 |
Protein GI | 219110187 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GACCTGACTA TGGCGTGGAC TGTTGGGCGT TGTCTCCTCC CGTCTTCTTC GCTGACTGTG AATAAACATT TAGTTTCTGT GTTGTCCCTC GGTGATCTCT TACGTCTACC TTGTATATTC TAGTGCTATG GCTTCCGAAG GCGCTTCTGG TGCCGCTTCG GGCGGCCAGT TGCAAGAAAA GTTGGACCTG TCGAAGGAAA CCGACGCCAA AATAGAACAG GCTCGAACGC TCGTCAACGC GGGACAGTTG CCGGAAGCAC TCGCTCTACT ATCCGCGTTG GAAAAACAAT GCCGGGTGGG GAACGACAAT CCTTCTTTGG TCCGTGTCTG CGAAGAAAGC CTCAAGCTGT GCCGGCAAGT CGGCGACGAA GACGCCATGG TCGACACGAT CCAAAGCCTG GTGACGCGAC GCTCACAAAA GACCTCCGCC GTAAAAGCCC TGGTGCAGAC GGCCTTGCCA TGGTGCGTCG AAGAACCCTT CGCACCTTTG CCAGTGTCCA CCGATTCCGA AATTGCCTTT CGGGATCGTT TGGTCGTCGT CTTGCGGGAC GTTACCGACG GAAAGCTCTT TTTGGAACGG GAGCGGGCGC AGTTGACCCG CGCGTTGGCG ACCATTAAGG TACGTGTGCA ACACCTTGCC GTGAGAGCAT ACTGATTCGC GATTCTCTCA TTGAATCTAA CCGTGTGTTG GTGTCACAAT GGTCCGGATT CTTACCCGTT ACGGTTGTAT TTTAGGAACA ACAAGGGGAT ATTTCTGAAG CCGCCAACGT GTTGCAAGAT GTACACGTTG AAACTTACGG TTCACTTTCC AAAAAGGATA AGATCGAATT TATTCTCGAG CAAATGCGTC TTACGCTGGC CAAGAAAGAT TTTGTCCGGG CTGCCATTGT TGCAGGAAAA GTATCAAAGA AAAATTTGGC GGAAGAGAAC ATGAAAACGT ACAAGGTCCA ATTTTATACA CTCATGACAA TTTACCATCG GCACGATAAG AACGCTCTCG ATTTGGCCAG AGATTATCAT GCTATTTACT TGACTCCGCA TATATTGGCG GACGGTGTCA AATGGAGGGA AGCCTTGCAA GCGACGGTCG TTTTCTTGGC GCTTAGTCCG TACGACAACG AACAGCAAGA TATGTTGAAT CGGATTGCCC TGGAGGAGAA CTTGGAAAAA CTTCCGGCTT GCAAGTGAGT ATCGTGCTTT GTGTAAATGA CAGTACTGGC TAGTGTAGTG TTCACGAAGT ATTCTTGTTG GTTGCCAGTG TCTACTTTCT CATTATATTC GTTTGGTTCT GGACAGAAAA ACGATTGATC TCTTGCTCAA GAAGGAAATC ATTAATTACC CAATGACGCA TCAAGCCGAA CTCGAAGCGC TACCGGTATG TCACGAAGGT GGCGAAGATC TGGCGGCGCA CTGGCACGAA GTTTTTCACC GCCGCATTAT TCAGCACAAT ATTCGCGTCG TCTCGGTTTA CTACAAACGT ATTCACGGTG CCCGTCTCGC ACAGCTCTTG CAACTGGAGC CCGCTCGGGT CGAAAAGGAA ATAGCATCCA TGGTCAGCGA AGGCTCGATT TACGCCAAGA TCGATCGCCC CAAAGATATT GTTCGCTTTT CACAACCCAA AACGGCGGAA GCGGTTCTTT CGGACTGGGC TTCGGACATT GATAAGCTGC TTAATTTGGT CGAAACAACC ACACATTTGA TTGACAAGGA AAACATGACG AGTTCGTAGT GATCTATTAA GCTTGAAAAG GTTTTACTCC GCC
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Protein sequence | MASEGASGAA SGGQLQEKLD LSKETDAKIE QARTLVNAGQ LPEALALLSA LEKQCRVGND NPSLVRVCEE SLKLCRQVGD EDAMVDTIQS LVTRRSQKTS AVKALVQTAL PWCVEEPFAP LPVSTDSEIA FRDRLVVVLR DVTDGKLFLE RERAQLTRAL ATIKEQQGDI SEAANVLQDV HVETYGSLSK KDKIEFILEQ MRLTLAKKDF VRAAIVAGKV SKKNLAEENM KTYKVQFYTL MTIYHRHDKN ALDLARDYHA IYLTPHILAD GVKWREALQA TVVFLALSPY DNEQQDMLNR IALEENLEKL PACKKTIDLL LKKEIINYPM THQAELEALP VCHEGGEDLA AHWHEVFHRR IIQHNIRVVS VYYKRIHGAR LAQLLQLEPA RVEKEIASMV SEGSIYAKID RPKDIVRFSQ PKTAEAVLSD WASDIDKLLN LVETTTHLID KENMTSS
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