| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG2200 |
|---|
| Symbol | |
|---|
| ID | 2551859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | - |
|---|
| Start bp | 2306810 |
|---|
| End bp | 2308897 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637150763 |
|---|
| Product | TPR domain-containing protein |
|---|
| Protein accession | NP_906243 |
|---|
| Protein GI | 34541764 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCA AACGCTCCTT ATTCTTCCTC CTGCTCCTGC TCTCCGTGGC CACAGCTCGG
GCGCAGATAG ACGTCGATCG GGTGATCACG ATCGGGCGCA ATGCTCTCTA CTTCAACGAC
TACGTGGTGA GCATCGGGTA CTTCAACCAA GTGGTAGGCC TGCGCCCGTG GATGGCGGAA
CCTTATTTCT ATCGGGGAAT AGCCAAAATC AGTCTGGAAG ACTATACAGG GGCGGAAGCC
GATGCTTCGG CCTGCCTGCA GCGCAATGCG CTCATCCCCA AAGCATATCT TCTTCGGGGC
GTGGCACGGC AGAATCTGGG CAAAATCGAT TCAGCCATTC AGGACTACCG TCGCGGATTG
GAGCTGATGC CGAACGATGA GGGCATGCTG GTGAATCTGA CCGGAGTGCT CACCGACAGC
AAACGCTATG CCGAAGCACG GGAAGGGGTA GCCGAACTGC TCAAATTCTA CCCCAAAAGC
AAGCAAGCAC ATATAGCTCT CAGCGCGATA GAGCTGGGCG AGCAGGATAC CGTCGCAGCC
ATTCGCGAAC TGAACGAGGT ACTTCGGATG GACTCTCTCT TTGCTCCTGC CTATTCGCAG
ATGGCCATGC TGCACCTCAA GAGCAAGCGC AACGCAGAGG CTATGGCAGC CCTGGACAAA
GCAATAGAAT TGGAGCCGAG CGAACTGTCC AACTATATCA ACCGCGGTGT CATCCGCTAC
CAATCGAACG ACTTGCGTGG AGCCATGGAC GACTACAGCC ACGTCGTTCG CCAAAAGCCG
AACGACAAGT TGGCACGTTT CAACCGTGCC TTGCTCCGCT CTTACCTCGG TGACGTGAAC
AATGCCATCG AGGACTTCGA TGTAGTCATC CGTCTGGAGC CGGAGAACTA TCATGCACTC
TACAACCGTG CCATCCTCCT CACGCAGATC AACGAGAACC GAAAAGCCAT TACCGACTTC
GACAAAGTGC TGGGACACTA TCCTGACTTT GTCGTCGGCT ACTATGCTCG CTCCCAAGCC
AAAAAGGCAT TGGGCGACAC TCGCGGAGCC GAACGGGACT ACTGGCGCGC TTTCGACATA
GAAAAAGCGG CACAGAGCAA GACAAAAAAA ACGAAAAAAA GCAGCTCTTC GACTTCGACC
AAAGAGACAC GTGAGGATAG CGACGAAACG ATAGAGAAGT TCAACCTGCT CGTCGTATCC
GAGAAATCCT CCGAGAAGCG CACACGCTAC TCCAGTCGGA TACGTGGGCG GATTCAGGAC
AACGATGTAG AGGTACAGCC CTCGCCGCTA TTCGTCCTCA GCTACTACGA GCAGTCCTCT
TCCGAAGAGG TGCCGCGCGT CTACTACTCG GAAGCCATTG CTCGCTTCAA CGACAAAAAG
GTTCTGCCCA AGCGACTCAA ACCGATCAAC CGTGAGGTAG CTCTGAGTCA AGAGCAGGTG
GCATATCACG AACAGGACAT AACGGAAATA TCCGAGAGGA CTGCCGGCAA TGCAGATCTG
TGCTTCCGTC GCGCTTTGGA CTATATGCTG ATACAGAATT TGGAGCAGGC CATCGTCGAT
TTCGATCAGG CTGTAGAGCT GAACAAGCAG TTTGCCCTCG CATACTTCGG AAGAGCCATT
GCACGTGCCA AGCTGGTCGA GGCCCGTCAG GGAGCCTCCT TTATCCACCA AGAGGCCGAA
ACGGTGAATG CCATGACAAA AGCTCTGATC ACGACACCGC GAACCAATGC AATGGGAGTG
CCGGCGGCTG CCGAATCCCC CGAGCGTAAG CCTGCCATAT CGGATGTGGA CGGTGAGCTG
GTGATGCGCG ACCTGAACCG CACGATCGAG CTGGATCCGA ATTTTGCCTA TGCCTACTAC
AATCGTGCCG TGCTACTGGC CAGACGAGGC GATACGGATG CTGCCCTGTC GGACTACGAC
CGTGCCATCA AAGCCTATCC GGAGTTTGCC GATGCCTATT TCAATCGCGG CCTGCTGTTG
CTTTCGCGCG GAAAGGCCAA AGAAGGCATC GCCGATCTGA GTCGGGCAGG CGAATACGGG
CTCTACAAGG CGTACAACAT CATCAAACGA ATGAGCACGA AGTCATGA
|
|---|
| Protein sequence | MTFKRSLFFL LLLLSVATAR AQIDVDRVIT IGRNALYFND YVVSIGYFNQ VVGLRPWMAE
PYFYRGIAKI SLEDYTGAEA DASACLQRNA LIPKAYLLRG VARQNLGKID SAIQDYRRGL
ELMPNDEGML VNLTGVLTDS KRYAEAREGV AELLKFYPKS KQAHIALSAI ELGEQDTVAA
IRELNEVLRM DSLFAPAYSQ MAMLHLKSKR NAEAMAALDK AIELEPSELS NYINRGVIRY
QSNDLRGAMD DYSHVVRQKP NDKLARFNRA LLRSYLGDVN NAIEDFDVVI RLEPENYHAL
YNRAILLTQI NENRKAITDF DKVLGHYPDF VVGYYARSQA KKALGDTRGA ERDYWRAFDI
EKAAQSKTKK TKKSSSSTST KETREDSDET IEKFNLLVVS EKSSEKRTRY SSRIRGRIQD
NDVEVQPSPL FVLSYYEQSS SEEVPRVYYS EAIARFNDKK VLPKRLKPIN REVALSQEQV
AYHEQDITEI SERTAGNADL CFRRALDYML IQNLEQAIVD FDQAVELNKQ FALAYFGRAI
ARAKLVEARQ GASFIHQEAE TVNAMTKALI TTPRTNAMGV PAAAESPERK PAISDVDGEL
VMRDLNRTIE LDPNFAYAYY NRAVLLARRG DTDAALSDYD RAIKAYPEFA DAYFNRGLLL
LSRGKAKEGI ADLSRAGEYG LYKAYNIIKR MSTKS
|
|---|
| |