| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG1762 |
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| Symbol | secDF |
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| ID | 2552333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | + |
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| Start bp | 1848017 |
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| End bp | 1850962 |
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| Gene Length | 2946 bp |
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| Protein Length | 981 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637150371 |
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| Product | bifunctional preprotein translocase subunit SecD/SecF |
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| Protein accession | NP_905864 |
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| Protein GI | 161579529 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAACA AAGGATTTGT GATTGTTATC ACATCGGCTC TGGCCATCAT CTGTGCGTTT
TACCTGTCAT TCTCTTTCGT TACGAACCGT TACGAAAAGA AGGCTAAGGC GATGGGCGAT
GTTGCCGGAA TGGCCTATCT TGATTCCATG TCGAATGAGA AGGTCTGGTT CGGCTACACG
CTGAAAGAAG CTCAAGCCCA GCAAATTGGT CTTGGCCTTG ACTTAAAGGG GGGTATGAAC
GTTATCTTGA AACTTAACGC AAGCGATCTG CTTCGTAACC TCTCTAACAA AAGTTTGGAT
CCCAACTTCA ACAAAGCTCT GGAGAATGCT GCCAAGAGCA CGGAGCAATC CGACTTCATC
GATATTTTCG TGAAGGAATA TCGCAAGCTC GATCCCAACG GTCGCTTGGC CGTTATCTTC
GGTTCGGGTG ACCTTCGCGA CCAGATTACC GCAAAGTCTA CGGATGCAGA CGTAGTGCGT
CTGCTCAAAG AAAAATATAA TAGTGCTGTA GAAGCTTCGT TCAATGTGCT CCGTGCTCGT
ATCGATGCTT TCGGTGTGGT TGCACCTAAT TTGCAGCGAT TGGAAGGGCA AGGGCGTATC
CTTGTCGAAC TCCCCGGAGT GAAAGACCCT GAGCGTGTTC GTACCCTTTT GCAACGCAGT
GCCAACCTAC AGTTCTGGCG TACATACAAA TTCGAAGAGG TCAGCGGAGA CTTGATCGCT
GCCAATGATC GTCTGAGCGA ATTGGCTATG AACAACACGG ATGCTACCCC GGAAACAGAG
CCTGCAACTA CTGACTCTGT AGCTGCAACA GCCGATTCTG CTGCTGTACA AGCTGTAGCT
GATTCTGCTA CTGTAGCACA AAAAGAGGCC AAGGATGCTA CTCGTAAAGA CGCACTCTTC
TCTCTGCTTA CTCCCGTGAA TCGTGGCGGT GCAGTAGTGG GTGTGGCTCG TCGTGCTAAT
ATGGCTCAGA TATCTGAAAT GCTCCAGCAA GCTCACGATC TGAAGGTTAC ACGTGAAGAT
GTGCTTTTCC TCTGGGGTGC TAAAGCAATC GAAGACCCCG AAACCAAAAA GGAGACCGAC
CTCTACGAAC TCTATGCTAT TCGTACCAAT CGTACGGGAG ATCCTGATTT GGGAGGTGAT
GTAGTGACTT CCGCCAAGAG TGATATCCAA AATGACTTCG GTCGTTCCGA ACCGATCGTT
TCGATGACGA TGAATGAAGA AGGTGCTCGT AAATGGGCGC GTATCACAAA GGATAACGTG
GGACGGGCAA TCGCTATCGT TTTGGATGGT GTGGTTTATT CTGCTCCGAA CGTGAATGAT
GAGATCACGG GCGGTCGCTC TCAGATCTCC GGGCACTTCA CCGTGGAGGA GGCCGGTGAC
CTTGCCAACG TACTCAACTC CGGTAAAATG GATGCTACGG TAAGCATCGA ACAGGAAAAC
GTGATTGGTC CTACGCTGGG TGCCGAGTCC ATTAAAGCCG GATTCTTGTC GTTCCTGCTC
GCTTTGGTTA TCCTGATGTG TTACATGTGT CTGGCTTACG GTTTCTTGCC GGGTCTTATC
GCAAACGGCG CATTGATTGT AAACAGCTTC TTCACATTGG GCGTATTGGC TTCTTTCCAT
GCCGTGCTGA CCCTCTCGGG TATCGCAGGT TTGGTGCTGA CGCTGGGTAT GGCTGTGGAT
GCCAACGTAC TTATCTTCGA GCGTATCAAA GAAGAGCTTC GTGCCGGTAA GACTCCGATT
CGTGCCGTTA CGGATGGTTA TGGCAACGCT TTCTCTGCCA TCTTCGACTC GAACGTTACG
ACTATTATTA CCGGTATCAT CCTATTCCTC TACGGGACGG GGCCGATTCG CGGTTTTGCC
ACTACGTTGA TTATCGGTCT TATCGCTTCT TTCATTACGG CTGTCTTCTT GACTCGTATC
GTCTTCGAGA AACTGGCGAA AAAAGGTCGT TTGGATAAGA TTACATTCAC TACGAGCATT
ACTCGCAATC TCCTTGTCAA TCCCTCATAC AACATCTTGG GTAAGCGCAA GACCGGCTTT
ATCATTCCGG TGATTATCAT CGTTTTGGGA CTTATAGCTT CATTTACAAT CGGTCTCAAT
AGGGGTATTG AATTCTCCGG AGGACGTAAC TACGTAGTTA AATTCGACCA GCCTGTATCT
TCCGAAGCCG TTCGTTCGGC CTTGTCTTCT CCCCTGCAGG AAAAGGTATT GGTTACCTCC
ATCGGTACTG AAGGGACAGA GGTGCGTATA TCTACGAACT ATAAGATCCA GGAGGAAAGC
GAAGAAACTG AAGCAGAGAT TACTGACAAA TTGTATCAGA GCCTGAAAGG TTTCTACACC
CAGCAGCCTA CTGCTGATCA GTTCTTGGAC AATATCATTA GCTCTCAGAA AGTAAGTCCC
AGTATGTCGA GTGACATCAC GAGAGGTGCT ATTTGGGCTG TGCTGTTATC GATGATCTTC
ATGGCCATTT ATATTCTGAT TCGCTTCCGT GACATTTCTT TCTCTGCCGG GGTATTCGTA
TCTGTGGCCG CTACTACATT CTGCATTATT GCTCTGTATG CGTTGCTGTG GAAGATTCTG
CCCTTCACCA TGGAGATCGA TCAGAACTTC ATCGCTGCTA TTCTGGCTAT CATCGGTTAC
TCGCTCAATG ACACCGTGGT TGTATTTGAC CGTATCCGAG AGACGATGAA ATTGTACCCC
AACAGAGATC GCTATCAGGT GATCAACGAT GCCCTTAATT CAACATTGGG TCGAACATTA
AATACGTCTT TGACTACGTT TATCGTTATG TTGGTAATCT TCATCTTTGG AGGTGCTACG
ATGCGTAGTT TCACGTTCTC GATCCTGCTC GGTATCGTTA TCGGTACATA CTCTACGCTC
TTTGTTGCTA CACCCCTTGC CTACGAGATC CAAAAGCGCA AGCTCAACAA AGCAGCTAAG
AAATAA
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| Protein sequence | MQNKGFVIVI TSALAIICAF YLSFSFVTNR YEKKAKAMGD VAGMAYLDSM SNEKVWFGYT
LKEAQAQQIG LGLDLKGGMN VILKLNASDL LRNLSNKSLD PNFNKALENA AKSTEQSDFI
DIFVKEYRKL DPNGRLAVIF GSGDLRDQIT AKSTDADVVR LLKEKYNSAV EASFNVLRAR
IDAFGVVAPN LQRLEGQGRI LVELPGVKDP ERVRTLLQRS ANLQFWRTYK FEEVSGDLIA
ANDRLSELAM NNTDATPETE PATTDSVAAT ADSAAVQAVA DSATVAQKEA KDATRKDALF
SLLTPVNRGG AVVGVARRAN MAQISEMLQQ AHDLKVTRED VLFLWGAKAI EDPETKKETD
LYELYAIRTN RTGDPDLGGD VVTSAKSDIQ NDFGRSEPIV SMTMNEEGAR KWARITKDNV
GRAIAIVLDG VVYSAPNVND EITGGRSQIS GHFTVEEAGD LANVLNSGKM DATVSIEQEN
VIGPTLGAES IKAGFLSFLL ALVILMCYMC LAYGFLPGLI ANGALIVNSF FTLGVLASFH
AVLTLSGIAG LVLTLGMAVD ANVLIFERIK EELRAGKTPI RAVTDGYGNA FSAIFDSNVT
TIITGIILFL YGTGPIRGFA TTLIIGLIAS FITAVFLTRI VFEKLAKKGR LDKITFTTSI
TRNLLVNPSY NILGKRKTGF IIPVIIIVLG LIASFTIGLN RGIEFSGGRN YVVKFDQPVS
SEAVRSALSS PLQEKVLVTS IGTEGTEVRI STNYKIQEES EETEAEITDK LYQSLKGFYT
QQPTADQFLD NIISSQKVSP SMSSDITRGA IWAVLLSMIF MAIYILIRFR DISFSAGVFV
SVAATTFCII ALYALLWKIL PFTMEIDQNF IAAILAIIGY SLNDTVVVFD RIRETMKLYP
NRDRYQVIND ALNSTLGRTL NTSLTTFIVM LVIFIFGGAT MRSFTFSILL GIVIGTYSTL
FVATPLAYEI QKRKLNKAAK K
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