| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG0394 |
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| Symbol | rpoB |
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| ID | 2551568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Porphyromonas gingivalis W83 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002950 |
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| Strand | + |
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| Start bp | 425189 |
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| End bp | 428998 |
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| Gene Length | 3810 bp |
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| Protein Length | 1269 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637149170 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | NP_904700 |
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| Protein GI | 34540221 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCGA CTACAAACAA CAAAAGAATC AACTTTGCTT CGATAAAAAA TCCGCTTTTC
TATCCGGACT TTCTCGAAGT TCAACTCAAG TCGTTCCATG ACTTCCTTCA GTTAGATACT
CCGCCCGAGA GGAGAAAAAA AGAAGGTCTT TATAAAGTTT TTGCGGAAAA TTTTCCAATA
ACTGACACCC GTAATAACTT TGTCCTGGAA TTCCTTGACT ACTATATCGA TCCCCCCAAG
TATTCCATTG AGGAATGTCT TAGCAGGGGG CTCACCTATA GCGTCCCTCT GAAAGCTAAG
CTAAAACTGT ATTGTACGGA TCCTGATCAC GAAGATTTTG CGACCGTAAT TCAGGACGTT
TTTCTTGGCC CCATACCCTA TATGACAAGT TCCGGCACAT TTGTTATAAA TGGAGCCGAG
CGCGTCATTG TTTCCCAATT GCACCGTTCT CCGGGTGTAT TCTTTGGGCA AAGTCTTCAT
ACTAATGGTA CCAAACTATA TTCAGCGCGA ATCATACCAT TCAAAGGCTC ATGGATTGAA
TTTGCTACGG ACATTAACAA TGTCATGTAT GCATACATCG ATAGAAAGAA GAAACTTCCT
GTAACAACTC TTCTCCGTGC CATTGGTTTC GAAGCAGACA AAGACATTCT CGACATCTTC
AATCTTGCCG AAGAGGTAAA AGTGACGAAG GCCAACCTGA AGAAATGTAT AGGGCGCAAA
TTAGCAGCTC GCGTCATCAA TACGTACATC GATGACCTCA GTGACGAAGA CACTGGCGAA
GTTGTTTCCA TGGAGCGAAT CACTGTCGTG GTGGACAGAG AGGTTGAACT GACAGAAGAT
AATATCGAGG CAATCCTCAA CTCAAATACA CAAACAATCC TACTGCACCG AAACGATTCG
AATACTTCTG ATTATAGTAT TATATTCAAC ACTTTACAGA AGGATCCATG TAACTCGGAA
AAAGAGGCTT TGTACTATGT ATACAGGCAG CTCCGTAATG CAGAACCTGC AGACGATGCA
AGTGCTAGAG AAGTAATAAC GAATCTGTTT TTCTCTGATA AACGATACGA CTTGGGCGAT
GTCGGACGCT ATCGTATCAA TAAGAAACTC AATTTGAATA TTGATCCTGA TATCAAAGTG
CTGACCAATG AAGATATTAT TGAGATCATC AAGTATCTTA TTGAGTTAGT AAATTCCAAG
GCATCAGTAG ATGATATAGA CCACTTGTCG AACCGTCGTG TTCGGACTGT CGGAGAGCAG
CTTTACAACC AATTTGGTAT TGGTTTGGCC CGTATGGCCA GGACAGTACG CGATCGAATG
AATGTTCGCG ATAATGAAGT TTTCACACCT ATCGATTTGG TCAATGCTAA GACTATTTCC
TCCGTTGTGA ATTCTTTCTT TGGCACCAAT GCCTTGTCGC AGTTCATGGA TCAGACAAAC
CCATTGGCTG AAATAACGCA TAAGCGACGT CTGTCGGCAT TGGGCCCCGG AGGTCTATCG
CGCGAACGGG CCGGCTTTGA AGTGCGAGAC GTTCACTACA CGCACTACGG TCGTCTATGC
CCTATTGAAA CACCTGAAGG ACCTAATATC GGTCTGATCT CCTCCCTCTG CGTATACGCC
AAAATCAGTG ATTTGGGTTT TATTACAACA CCATACCGGG AAGTAAAGAA CGGCAAAGTA
GATTTCTCCG ACAATGGACT GAAATACTAC ACGGCAGAAG AAGAGGAAGA GAAGACCGTA
GCACAAGGAA ATGCGCCTCT TGACGAAAAT GGTCGATTTG TCAGAGAACG AGTAAAAGCA
CGTTACGAGT CGGATTTCCC ATTAGTTACA CCGGATGAGG TCGACCTGAT GGACGTTTCG
CCTACTCAAA TTGCTTCAAT CGCAGCAGCT TTAATTCCCT TCTTGGAACA CGACGATGCC
AACCGTGCGT TGATGGGTTC TAACATGATG CGTCAGGCTG TTCCCCTACT AAGACCTGAA
TCTCCGATTG TTGGTACTGG TATAGAAGGA AAATTAGTGA AAGATTCTCG CACACAGATT
GTGGCAGAGA GGGGCGGAGA GGTCGTTTTT GTCGATGCCT CGTGCATCAA AATTCGTTAC
GACAGAACAG CTGACGAAGA GTTTGTAAGT TTTGATGATG CAATCGTCAC CTACTATCTC
CCCAAATATC GCAAAACGAA TCAGAGTACA ACTATCGACT TGCATCCCAT TTGCTCCAAA
GGAGATAGAG TGGAGGCCGG TCAAATCCTG ACGGAGGGTT ATTCTACCCA AGGAGGAGAA
TTGGCTCTCG GCCGTAATGT TCAAGTAGCA TACATGCCCT GGAAAGGATA TAACTATGAG
GATGCTATCG TTTTGAATGA GCGAATGGTT AGAGAGGACT TCTTCACATC TGTTCACGTG
GACGAATATA TCCTTGAAGT GAGAGAGACT AAAAGAGGTC TTGAAGAGTT AACTTCGGAT
ATTCCGAATG TCAGTGAAGA CGCTACAAGA GACTTGGACG AAAACGGTAT CGTGCGCATC
GGGGCACATA TCGAACCCGG AGATATCCTT ATTGGAAAAA TTACACCTAA AGGGGAGTCA
GATCCAACCC CTGAAGAAAA ACTGCTACGA GCAATTTTCG GTGATAAAGC CGGTGACGTT
AAGGATGCAT CATTGAAAGC CACTCCCTCT CTGCGCGGAG TTGTAATTGA CACCAAATTG
TTTTCTAAGG CGGCAAAGAA AAAGAGTCGG ACATCGACCA AAGAAGCTGT AAGCAAACTT
GACGAAACAT ACGCGAAAAG GCAGCAACAA CTTCATGAGC GTCTGATCGA CAAGCTAACA
GAACTGACCA AAGGCAAAAC CTGCTGTGGC GTAAAGGACT ACTTGAATGT TGAGTTGATT
AAGGCCGGCA GCAAATTCGC CAAAAAAGAT CTTGAAGCTC TTGATTTCAA TGTGATCCAA
TTAAGTGATT GGACAAATGA TGCACATACG AACGAGTTGA TTAAGGCTGT TGCGGTGAAT
TATCTGAAGC ACTCCAAGGA GATTGAAGCT GAACTACGGC GTCGCAAATT AGATGAGACC
ATCGGGGACG AACTGCCTGC CGGTATTGTT CAAATGGCCA AAGTCTATAT AGCCAAGAAA
CGGAAGATCC AAGTTGGCGA CAAGATGGCC GGACGTCATG GAAATAAAGG TATTGTGTCC
AAAATCGTGC GTCAAGAGGA TATGCCGTTC CTCGCAGACG GTACTCCGGT AGACATATGC
CTAAACCCTC TTGGTGTACC CTCCCGTATG AACCTGGGAC AGATATTCGA AGCGGTACTT
GCCTGGGCGG GACGCAAGAT GAATGTCAAA TTTGCTACAC CTATCTTCGA TGGAGCTTCC
CTCAATGATA TGAATGAGTG GACAGACAAA GCAGGGCTAC CTCGTGATGG AAAGACATAT
CTATACGATG GTGGTACCGG CGAACGTTTC GACCAACCTG CAACCGTTGG TGTAACTTAT
TTCTTGAAGC TTGGACACAT GGTTGATGAC AAGATGCATG CTCGATCCAT CGGGCCATAT
TCACTCATCA CCCAGCAACC TCTCGGCGGT AAAGCCCAAT TCGGAGGACA ACGATTTGGA
GAGATGGAGG TTTGGGCTCT TGAAGCATTT GGAGCTTCGC ATATCTTGCA AGAAATTCTT
ACTGTGAAAT CTGACGATGT TGTTGGACGT TCAAAGGCAT ACGAAGCGAT AGTCAAAGGA
GATCCGATGC CTACACCGGG TATTCCGGAG TCGCTTAACG TGCTATTGCA TGAATTGAAA
GGCCTTGGTT TAAGTTTTTC TTTGGACTAA
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| Protein sequence | MTPTTNNKRI NFASIKNPLF YPDFLEVQLK SFHDFLQLDT PPERRKKEGL YKVFAENFPI
TDTRNNFVLE FLDYYIDPPK YSIEECLSRG LTYSVPLKAK LKLYCTDPDH EDFATVIQDV
FLGPIPYMTS SGTFVINGAE RVIVSQLHRS PGVFFGQSLH TNGTKLYSAR IIPFKGSWIE
FATDINNVMY AYIDRKKKLP VTTLLRAIGF EADKDILDIF NLAEEVKVTK ANLKKCIGRK
LAARVINTYI DDLSDEDTGE VVSMERITVV VDREVELTED NIEAILNSNT QTILLHRNDS
NTSDYSIIFN TLQKDPCNSE KEALYYVYRQ LRNAEPADDA SAREVITNLF FSDKRYDLGD
VGRYRINKKL NLNIDPDIKV LTNEDIIEII KYLIELVNSK ASVDDIDHLS NRRVRTVGEQ
LYNQFGIGLA RMARTVRDRM NVRDNEVFTP IDLVNAKTIS SVVNSFFGTN ALSQFMDQTN
PLAEITHKRR LSALGPGGLS RERAGFEVRD VHYTHYGRLC PIETPEGPNI GLISSLCVYA
KISDLGFITT PYREVKNGKV DFSDNGLKYY TAEEEEEKTV AQGNAPLDEN GRFVRERVKA
RYESDFPLVT PDEVDLMDVS PTQIASIAAA LIPFLEHDDA NRALMGSNMM RQAVPLLRPE
SPIVGTGIEG KLVKDSRTQI VAERGGEVVF VDASCIKIRY DRTADEEFVS FDDAIVTYYL
PKYRKTNQST TIDLHPICSK GDRVEAGQIL TEGYSTQGGE LALGRNVQVA YMPWKGYNYE
DAIVLNERMV REDFFTSVHV DEYILEVRET KRGLEELTSD IPNVSEDATR DLDENGIVRI
GAHIEPGDIL IGKITPKGES DPTPEEKLLR AIFGDKAGDV KDASLKATPS LRGVVIDTKL
FSKAAKKKSR TSTKEAVSKL DETYAKRQQQ LHERLIDKLT ELTKGKTCCG VKDYLNVELI
KAGSKFAKKD LEALDFNVIQ LSDWTNDAHT NELIKAVAVN YLKHSKEIEA ELRRRKLDET
IGDELPAGIV QMAKVYIAKK RKIQVGDKMA GRHGNKGIVS KIVRQEDMPF LADGTPVDIC
LNPLGVPSRM NLGQIFEAVL AWAGRKMNVK FATPIFDGAS LNDMNEWTDK AGLPRDGKTY
LYDGGTGERF DQPATVGVTY FLKLGHMVDD KMHARSIGPY SLITQQPLGG KAQFGGQRFG
EMEVWALEAF GASHILQEIL TVKSDDVVGR SKAYEAIVKG DPMPTPGIPE SLNVLLHELK
GLGLSFSLD
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