| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC8801_1518 |
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| Symbol | |
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| ID | 7104161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cyanothece sp. PCC 8801 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011726 |
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| Strand | + |
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| Start bp | 1590944 |
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| End bp | 1593196 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643474592 |
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| Product | VacB and RNase II family 3'-5' exoribonuclease |
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| Protein accession | YP_002371729 |
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| Protein GI | 218246358 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTTT CAATCGCTAC ACTACTGTCC CATTTTACTG ATGATAAATT AGTTGCAGCT
AAATTCCTAG AAAAAAAACT AGGCTGTGAA GATGAAGAAA ACATCGAAAA ACTGCAAATT
GTTTTGGATG CCTTAGAAAG AATTGGGATT CTAGAAAAAG AAAGGGGCAA ATATCGTCGA
GTTCCTGACA ATAACCTCAT TGAAGCCAAA CTGCGCTGTT CAAGTAAAGG CTTTTGCTTT
GCTATCCAAG ATCAAGAAGA TGCCGATGAC ATTTACATCC GAGAAACTCA TTTGAGTAAC
GCTTGGAACG GCGATCGCGT CTTAGTTGAG GTGATCAAAG AAGGAACCCG TCGTCGTTCT
CCCGAAGGGG AAGTGAAAGT CATTTTAGAA CGGGCTAACC CTTCCTTGCT TGCCCAAGTC
AAAAAGAATA ATGAGGATTA TCGGGCGATT CCCCTCGATG ATCGTCTGTT ATTTGAACTC
CTTTTGCAAC AAAATGGCAA AAATTTAGAA CAAGCCGTCG ATCATTTAGT TCATGTCTCA
GTGGTACGCT ATCCCATCGG CGAACATCCC CCCATCGGCA TAATCACTCG TATTTTGGGC
AGTGACGCAG AAGCGGCAGC CGATACCGAT ATTGTCTGTT GTAAACACGA TTTACCACAA
AGTTTCCCTG AAGCAGCCGA AAAAGCGGCC GATAGTTTAC CACAAAGCTT TGACCCCGAA
GAAATTGAAC AACGCATCGA TTTACGCCAT CTACTGACAT TTACCTTTGT CGAAGACACT
CAACGCGATC TCACTCCCTT TATTGAAACC GCCTTTACCC TAGAGAAAAC CCCGGAACAA
TACTGGCAAT TGGGCATCCA TATTACCGAT GTCGCCTATT ATATCGCTCC CGATTCAATT
CTCGATAAAA TTGCCAAAAA ACGAGGCACA ACTGTCTATT TAGGCGAAAA AGTCATTCCC
CTGTTACCGC AAGGCGTGAC TCAAGGTTGT TCCCTAACCC CTGGACGAGA TATTTTAACT
GTTTCAGTGT TGATGACTCT CGATAAAAAT GGCCAACTGC TAGAATTTGA AATCCAACCG
ACAGTCATTC AGGTTAATGA GCAGTTGAAG TACTCTGAAG TACAAGCAAT CCTGGCCAAT
CTCGATGACA TTTCCCCCGA ACAGGAAGCC TTAGCCGAAC GGCTAAAACA ATTGTTCTTC
ACCCTGAGTC CTTTGGTGAA AGCACAACGG ATACAACGAG GCGGCTGTGA AATTCAATTA
GAACCGCGAT CGCCCTATCA AGATGAGGGA AGACTGGGGG TGATTTTGGG TTCCTCCGTG
TTTCCGGTGC GTTCCCTCTT GATGGAATTG GTGGTGATTG CCCAAAAAGC CGTAGCCGAT
CATCTCTATG CCCTAGGGAT TCCCGCTTTG TACTGTACCC AACCTCAGCC CGATTGGGAA
GAATTAGAAG ATTTACTGAA ATTAATCGCT AATTTGGGTC TTGATGTCAA ATTAGGCTCT
GAAGAAGAAA TTACCCCCCA AGACTATTAC AATCTGACTC AGGCTTTTGG TCAATCCTCG
GCGGTTCAGG TCTTAAATTA TTTATTGAAA TCGACCCTAA AATCGGCTAA ATATAGTAGC
CATAGTGCCC CTCATTTTGG GTTAGCCTAT GGCGATTGTT ATCTTCACTG TATTTCCCCC
GGACAACGCT ATGGCGATTT GTTGGTACAA AGGATTTTAG GAGTATTATT TAAAGAAGGA
CGCGATCGCC GAACAAAACA GACAAAAACT GGGGTCAATC TCCGCAGTAG TCGCTGTCAC
GGCGAAATTA ATTGGAATGT GTTACCTCCG TCTGTACAAG AGACTTTTGA GGAAGAATTG
CATTTAGTAG TCTCTCACCT CAATGATCGG GAGAAATTGG CTGAAGATGC GGAAAAAGAC
TTAGATGGAC TCAAAAAAGC CGAGAAAATG AAGGAACGGA CTGGCCAAGT TTTCCGAGGG
TTAATTACGG GGGTTCAATC CTACGGATTT TTTGTCGAAA TTGAGGATTT ATTGGTAGAA
GGACTGGTTC ACGTCAGTTC TCTCAAAGAT GACTGGTATG AATATCGTGC CCGTCATGGC
TGTTTGGTAG GACGCAAAAA TCGCATTGCC TACCGCTTAG GCGATCAAGT CCAAGTAGAA
GTAAAAAGTG TAGACTATTA TCGGCAACAA ATTGATTTAG TAACCGTTAG TGGGGGGAGT
GAAGCCAATA GCGATGATTG GGAAGATGAG TGA
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| Protein sequence | MEFSIATLLS HFTDDKLVAA KFLEKKLGCE DEENIEKLQI VLDALERIGI LEKERGKYRR
VPDNNLIEAK LRCSSKGFCF AIQDQEDADD IYIRETHLSN AWNGDRVLVE VIKEGTRRRS
PEGEVKVILE RANPSLLAQV KKNNEDYRAI PLDDRLLFEL LLQQNGKNLE QAVDHLVHVS
VVRYPIGEHP PIGIITRILG SDAEAAADTD IVCCKHDLPQ SFPEAAEKAA DSLPQSFDPE
EIEQRIDLRH LLTFTFVEDT QRDLTPFIET AFTLEKTPEQ YWQLGIHITD VAYYIAPDSI
LDKIAKKRGT TVYLGEKVIP LLPQGVTQGC SLTPGRDILT VSVLMTLDKN GQLLEFEIQP
TVIQVNEQLK YSEVQAILAN LDDISPEQEA LAERLKQLFF TLSPLVKAQR IQRGGCEIQL
EPRSPYQDEG RLGVILGSSV FPVRSLLMEL VVIAQKAVAD HLYALGIPAL YCTQPQPDWE
ELEDLLKLIA NLGLDVKLGS EEEITPQDYY NLTQAFGQSS AVQVLNYLLK STLKSAKYSS
HSAPHFGLAY GDCYLHCISP GQRYGDLLVQ RILGVLFKEG RDRRTKQTKT GVNLRSSRCH
GEINWNVLPP SVQETFEEEL HLVVSHLNDR EKLAEDAEKD LDGLKKAEKM KERTGQVFRG
LITGVQSYGF FVEIEDLLVE GLVHVSSLKD DWYEYRARHG CLVGRKNRIA YRLGDQVQVE
VKSVDYYRQQ IDLVTVSGGS EANSDDWEDE
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