| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_3422 |
|---|
| Symbol | |
|---|
| ID | 7112037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | - |
|---|
| Start bp | 3818561 |
|---|
| End bp | 3820813 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643481664 |
|---|
| Product | VacB and RNase II family 3'-5' exoribonuclease |
|---|
| Protein accession | YP_002378685 |
|---|
| Protein GI | 218440356 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTT CAATCGCTAC ACTCTTGTCA TATTTCAGTA ATGACAAATT AGTCGCTGCT
AAAGTTCTAG AAAAAAAACT CGGATGTGAA GACGAACTAA GCATCCAAAA ACTACAAATT
GTCTTAGACG CTTTAGAACG AATCGGCGTA TTAGTTAAAG AAAGAGGAAA GTATCGACGA
GTTCAAGAAG ACAACGTCGT CGAAGCTAAA TTACGTTGCT CTAGCAAAGG GTTCTGTTTT
GCCATTCAAG ATCTCGAAGA TGCGGATGAT ATTTACGTTC GGGAAAGTCA TCTCAGTAAT
GCTTGGAATG GCGATCGGGT TCTGGTGAAA ATTATCAAAG AAGGGACTCG GCGACGGTCT
CCGGAAGGAG AAGTTAAACT GATCTTAGAA CGGGCGAACC CTTCTCTATT GGCACAAGTT
AAGCGCAATA ATGGAGATTA TCGAGCCGTT CCTTTAGATG ATCGTCTTTT ATTTGAATTA
GATCTCCAAT CTAATGAACA ACAGCTAGAA AAAGCGATCG ATCATCTGGT TCACGTCTCC
GTCTTGCGCT ATCCCATCGG CGAACATCCC CCCCTAGGCG AAGTGACTCG GGTTCTGGGA
AGTGACGCAG AAGCGGCGGC GGATACGGAT ATTGTTTCCT GTAAGCACGA TCTCCTTCAC
GCTTTCGCTG CCTCAGTCCT AAAAGCTGCC GAAAAACTGC CTAAAAGTTT CAGTAAATCA
GAACTCAAAA ATCGTCAAGA TTTAAGGAAA TTACTCACCT TTACCGTTGA GGATGGGATA
GAAAGAGATC ATCCTACCTT TATCGAACAG GCGTTTAGTC TCGAAAAACC CCAACCGGGT
TATTGGCAGT TAGGAATTCA TATCACTGAT GTCGCTTATT ATGTTGACCC GGATACGCCT
TTAGATAGAG GGGCAAAAAA ACGAGGAACA AGCATTTTTT TACGAGAAAA AACCCTGCCA
ATGTTTCCCG AAGCGATCAC CGATCGCTGT TCTTTAATCC CCGGAGAAGA TCGTTTAACC
TTATCAATTA TCATTACCCT TGATGAAAGA GGAAATATTG TAGAATTTGA AATTCAACCC
AGTGTTATTG AGGTCGGTCA TCATTTTACC TATTCTCAAA TTCAAGGAAT TTTAGGAAAA
TCCTATGAGG TAGAAGAAAG TTTAGATCCA GTCGTTGAAA GACTCAATGA TCTCTTTTTT
ACCCTCTGTC CCTTAATTAA AGCTCAACGC TTACAACGGG GGAGTTTTGA TATCCAATTA
GAAAAACATA GCCCCTTTAA AGATGAAGGA CGAGGGGGAG CAGTCTTAGT CTCCTCTGTT
TTACCGGTAC AATCTTTATT AAGTGAATTA GCGATTATTG CCGGGAAAAT TGTGGCAGAA
CATCTACGAG CGTTGGGACT TCCTGCTATT TATTGTATGC AGCCGGATCC AGATTGGGAA
GAGTTAGAAG ACTTACTAAA ATTAGCCAAT AATTTAGGGT TAGATGTGGG GTTAACCTCA
GAAGATGAAG TCACGCCTCA TGACTATCAA AACTTAACTC AAGCTTTTAA TCGTTCTTCG
TGCTTAAAAG TCTTAAGTTA TATGCTCTAT TCCACCCTAA AACAGGTGAA ATATACTACC
CATCCTTCCC CTCATTTTGG GTTAGCTTAC TCGGAATGTT ATACCCATTG TATTTCTCCT
GGACAACGGT ATGTAGACCT ATTGATCCAG CGAGTGTTAA AGACTATTTT TAGTGATGGA
CGCGATCGGG CTACCAAAAA CACCAAAATA GGGGTTAATT TGAGCAGTAG TAGTTGTCAT
GGTCAAATTA AATGGAATGT TTTACCCCCT CAACTCAAAG AGTCTTTTGA AGAAGACTTT
CATCTGATCG TTTCTCATCT CAACGATCGG GATAAAGTGG CCGAAGACGC AGAAAAAGAC
CTAGAAGGGT TAAAAAAAGC CGAAAAAATG AAAGAACGAA CCGGTCAAAT TTTCCGAGGG
TTAATTACGG GAGTTCAATC TTATGGGTTT TTTGTGGAAA TAGAAGACTT ATTAGTCGAA
GGGTTAGTCC ATGTCAGTTC CCTCAAAGAC GACTGGTATG AATACCGGGC CCGCCATAGC
TGTTTAGTCG GACGAAAAAA TCGCATCGCT TATCGCCTAG GAGATGAGGT AGAAGTGGAG
GTTAAGAATG TAGACTATTA TCGTCAGCAA ATTGATTTAG TGACCGTCGG GGGAGGAAGC
GCTCTCAGAA GTGAAGACTT AGAGGATGAC TAA
|
|---|
| Protein sequence | MEFSIATLLS YFSNDKLVAA KVLEKKLGCE DELSIQKLQI VLDALERIGV LVKERGKYRR
VQEDNVVEAK LRCSSKGFCF AIQDLEDADD IYVRESHLSN AWNGDRVLVK IIKEGTRRRS
PEGEVKLILE RANPSLLAQV KRNNGDYRAV PLDDRLLFEL DLQSNEQQLE KAIDHLVHVS
VLRYPIGEHP PLGEVTRVLG SDAEAAADTD IVSCKHDLLH AFAASVLKAA EKLPKSFSKS
ELKNRQDLRK LLTFTVEDGI ERDHPTFIEQ AFSLEKPQPG YWQLGIHITD VAYYVDPDTP
LDRGAKKRGT SIFLREKTLP MFPEAITDRC SLIPGEDRLT LSIIITLDER GNIVEFEIQP
SVIEVGHHFT YSQIQGILGK SYEVEESLDP VVERLNDLFF TLCPLIKAQR LQRGSFDIQL
EKHSPFKDEG RGGAVLVSSV LPVQSLLSEL AIIAGKIVAE HLRALGLPAI YCMQPDPDWE
ELEDLLKLAN NLGLDVGLTS EDEVTPHDYQ NLTQAFNRSS CLKVLSYMLY STLKQVKYTT
HPSPHFGLAY SECYTHCISP GQRYVDLLIQ RVLKTIFSDG RDRATKNTKI GVNLSSSSCH
GQIKWNVLPP QLKESFEEDF HLIVSHLNDR DKVAEDAEKD LEGLKKAEKM KERTGQIFRG
LITGVQSYGF FVEIEDLLVE GLVHVSSLKD DWYEYRARHS CLVGRKNRIA YRLGDEVEVE
VKNVDYYRQQ IDLVTVGGGS ALRSEDLEDD
|
|---|
| |