| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_1979 |
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| Symbol | |
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| ID | 7109447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cyanothece sp. PCC 7424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011729 |
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| Strand | + |
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| Start bp | 2230795 |
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| End bp | 2231925 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 643480237 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD subfamily |
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| Protein accession | YP_002377277 |
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| Protein GI | 218438948 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 0.953654 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGG CCAATGACGT ACTCGCAACC ATTACTGAGC CTCAAATGGA TTGGGACACA
TTCATCATCG ACGACATTGA TGAAACCGCC GAAGAGGAAC TAGAAGAGGC CGTAGCAGAC
GACAACAGCA AAAAAACTCG CAAAGTTACT GCTACTCGCC GTCGAGATGC GGGGAAGAAA
AAGCCCTACA CTGAGGACTC CATTCGGATT TATTTACAAG AGATTGGTCG GATACGACTC
TTAAGAGCCG AAGAAGAAAT CGAACTAGCT CGCAAAATCG CTGATTTACT AGAGCTAGAA
CGGCTTCGTG AAAAACTGCG GCGGAGTTTA GGTCGCTATC CCAGCGATAA AGAATGGGCT
GAACAAGTCG GGATGGAATT GCCTGCCTTT CAGCGCCGAT TATACTTAGG GCGAAGGGCA
AAAGACAAAA TGGTGCAGTC TAACCTGCGT CTGGTGGTTT CCATTGCCAA AAAGTATATG
AACCGAGGGT TATCTTTCCA AGATTTAATT CAGGAAGGGT CTTTAGGGTT AATTCGGGCA
GCCGAAAAAT TCGACCACGA AAAAGGGTAT AAATTCTCGA CCTACGCTAC CTGGTGGATT
CGTCAAGCAA TTACTAGAGC GATCGCCGAT CAATCTCGGA CTATTCGCTT GCCAGTTCAT
TTGTATGAAA CGATTTCTCG AATTAAAAAG ACGACCAAAA TTCTCTCCCA AGAAATGCGT
CGTAAACCCA CCGAGGAAGA AATTGCCACC CGGATGGAAA TGACCATCGA GAAACTACGA
TTTATTGCCA AATCGGCACA GTTACCCATC TCTCTAGAAA CCCCCATCGG AAAAGAGGAA
GATTCGCGCT TAGGAGATTT TATCGAAGCT GACGGAGAAA CTCCGGAAGA TGAAGTTTCT
AAAAATTTAT TGCGCGAAGA TCTAGAAAAC GTTCTCGATA CTCTCAGTCC TCGGGAACGG
GATGTATTGA GATTACGATA TGGATTAGAT GATGGACGGA TGAAAACCTT AGAGGAAATT
GGACAAATTT TTAATGTCAC TCGGGAAAGA ATTCGTCAAA TTGAAGCTAA GGCTTTACGA
AAATTACGTC ATCCCAATCG TAATAGCATT TTAAAGGAAT ATATTCGTTA G
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| Protein sequence | MTQANDVLAT ITEPQMDWDT FIIDDIDETA EEELEEAVAD DNSKKTRKVT ATRRRDAGKK
KPYTEDSIRI YLQEIGRIRL LRAEEEIELA RKIADLLELE RLREKLRRSL GRYPSDKEWA
EQVGMELPAF QRRLYLGRRA KDKMVQSNLR LVVSIAKKYM NRGLSFQDLI QEGSLGLIRA
AEKFDHEKGY KFSTYATWWI RQAITRAIAD QSRTIRLPVH LYETISRIKK TTKILSQEMR
RKPTEEEIAT RMEMTIEKLR FIAKSAQLPI SLETPIGKEE DSRLGDFIEA DGETPEDEVS
KNLLREDLEN VLDTLSPRER DVLRLRYGLD DGRMKTLEEI GQIFNVTRER IRQIEAKALR
KLRHPNRNSI LKEYIR
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