Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4028 |
Symbol | |
ID | 8135019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 4548254 |
End bp | 4549798 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644867339 |
Product | threonine dehydratase |
Protein accession | YP_003019579 |
Protein GI | 253690389 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1171] Threonine dehydratase |
TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.749661 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGTGT CACAACCTCT TCCTGCCGCG CCGGGAGGCG CGGAGTACCT GCGGGCGATC TTGCGCTCGC CCGTGTATGA AGTCACGCAG GTCACACCGC TGGAGAAGAT GGAGAAGATC TCTTCGCGGC TGGGTAATGT CATTCTGGTA AAACGTGAAG ATCGGCACGC GGTGCACAGC TTCAAGCTGC GCGGCGCGTA CGCGATGATG GCGGGGCTGA GCGACGAGCA AAAGTCACAC GGCGTGGTGA CGGCATCGGC GGGTAACCAT GCGCAGGGCG TGGCGCTCTC CTCCACCAAG CTGGGCATTA AATCGCTGAT TGTGATGCCA GTGGCGACGG CCGATATCAA AGTGGATGCG GTACGTGGTT TTGGCGGCGA AGTGCTGCTA TACGGCGCGA ACTTTGATGA AGCCAAGGCA AAGGCCATTG AACTGTCGCA GCAGCAGAAA ATGACGTTTC TACCGCCGTT CGATCACCCG GCAGTGATTG CGGGTCAAGG CACGCTGGCG CTGGAACTGC TACAGCAGGA TGCCCATCTG GATCGCGTGT TTGTTCCCGT CGGCGGCGGC GGTCTGGCGG CGGGTGTTGC CGTCCTGATC AAACAACTGA TGCCGCAGAT TAAGGTGATC GGCGTGGAAG CGGAAGATTC CGCCTGTCTG CGTGCGGCGC TGGATGCCGG GCAACCGGTC GATCTGCCGC GTGTCGGGCT GTTTGCCGAA GGCGTCGCAG TGAAACGCAT CGGCGATGAA ACGTTCCGCT TATGTCGGGA ATATCTGGAT GATGTGATTA CCGTCGACAG TGATGCCATC TGTGCGGCAG TGAAAGATCT GTTCGAAGAT GTGCGTGCGA TTGCTGAACC GTCCGGCGCG CTGGCGTTAG CGGGGATGAA AAAATACATC CAGCAGCACC AGATTCAGGG TGAGCGCCTG GCGCATATCC TGTCCGGTGC GAACGTTAAC TTCCACGGGT TACGCTACGT TTCCGAACGC TGCGAGCTGG GTGAACAGCG TGAAGCCTTG CTGGCCGTGA CGATCCCCGA GCAACAGGGC AGCTTCCTGA AATTTTGTCA ACTACTGGGC GGTCGTTCCG TTACCGAGTT CAACTATCGC TATGCGGATG CCAAAGATGC CTGCATTTTT GTTGGCGTGC GCCTGACGCG TGGCTATGCG GAGCGGCAGG AGATTATCGC TGAGCTTTCT GCAGACGGTT ATGAAGTGGT GGATTTGTCC GATGATGAAA TGGCGAAGCT GCACGTTCGC TACATGGTCG GCGGACGCCC CTCCAAACCG CTACAGGAAC GGCTTTATAG TTTTGAGTTC CCTGAATCGC CGGGGGCGTT ACTGAAATTC CTGCATACGC TGGGGACGCA CTGGAATATT TCGCTGTTCC ATTACCGCAG CCACGGCACA GATTTTGGCC GTGTGCTGGC CGCGTTTGAA CTGCAAGCGG GCGATCGGGA ATTCGAGCAG CATCTACAGG CGCTGGGCTA TGAATGCCAC GACGAAACCA ATAATCCGGC GTTCCGCTTC TTTTTAGCGG GTTAA
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Protein sequence | MAVSQPLPAA PGGAEYLRAI LRSPVYEVTQ VTPLEKMEKI SSRLGNVILV KREDRHAVHS FKLRGAYAMM AGLSDEQKSH GVVTASAGNH AQGVALSSTK LGIKSLIVMP VATADIKVDA VRGFGGEVLL YGANFDEAKA KAIELSQQQK MTFLPPFDHP AVIAGQGTLA LELLQQDAHL DRVFVPVGGG GLAAGVAVLI KQLMPQIKVI GVEAEDSACL RAALDAGQPV DLPRVGLFAE GVAVKRIGDE TFRLCREYLD DVITVDSDAI CAAVKDLFED VRAIAEPSGA LALAGMKKYI QQHQIQGERL AHILSGANVN FHGLRYVSER CELGEQREAL LAVTIPEQQG SFLKFCQLLG GRSVTEFNYR YADAKDACIF VGVRLTRGYA ERQEIIAELS ADGYEVVDLS DDEMAKLHVR YMVGGRPSKP LQERLYSFEF PESPGALLKF LHTLGTHWNI SLFHYRSHGT DFGRVLAAFE LQAGDREFEQ HLQALGYECH DETNNPAFRF FLAG
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