Gene PC1_3953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3953 
Symbol 
ID8134940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp4458986 
End bp4459468 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content50% 
IMG OID644867260 
ProductPTS system fructose subfamily IIA component 
Protein accessionYP_003019504 
Protein GI253690314 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2893] Phosphotransferase system, mannose/fructose-specific component IIA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.808645 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGAGAAG TTTATATCGC CAGCCATGGC CGATACGCTG AAGGGACGGT ATCCGCCCTG 
AATTTACTGA TTGGCGAAGA TCATGCGATT CAACCTATTT GCGCTTATTG CGGCGATATT 
GGTTCTACAG CTGAATTGGC TGAACGTTTT ATTGAGATTG CGCAGGAATC GGCGCGGCGT 
GGAAATGAGT TAGTTATTTT CACCGATATG CAGGGAGGCA GCGTTAATAA TACCGCGGTG 
CAACTGATGG TGAAATACCC ACATATGCAC GTGATTAGCG GCGCTAATTT GATCATGCTG 
ATGGCATTTT GCATGTCTGA AAACAGCGAT ACCGCCGCTC GGGTGCGTGA AGCGATCACG 
ATGGCGACAG AAGGTATGCA GTACATGAAT GCCGTTCCAG CGCTTCAGGC GGCGCGTGAA 
GCGAACTTTA GCGCTGAACA GGATGGCTCC GACGATTTCT TTACTACGGA GCTATCGCAA 
TGA
 
Protein sequence
MREVYIASHG RYAEGTVSAL NLLIGEDHAI QPICAYCGDI GSTAELAERF IEIAQESARR 
GNELVIFTDM QGGSVNNTAV QLMVKYPHMH VISGANLIML MAFCMSENSD TAARVREAIT 
MATEGMQYMN AVPALQAARE ANFSAEQDGS DDFFTTELSQ