| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3937 |
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| Symbol | |
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| ID | 8134924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4439434 |
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| End bp | 4441611 |
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| Gene Length | 2178 bp |
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| Protein Length | 725 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644867244 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_003019488 |
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| Protein GI | 253690298 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCGT TTTCTGATGC GATTAATTCA CTTATTTCCG GGCATTATGC CGATCCGTTT
TCGCTGTTAG GTATGCATCA TTCTTCTGAA GGCCTTGAGG TTCGGGCTCT GCTGCCGGAT
GCGCAGGCCG CTTGGGTGGT TGATGCCAGC AATGGACGAA AAATCGTTGA GCTGGAACGT
ATAGACGAAC GCGGTTTTTT TTGTGGTCTG GTGCCGCGCC GGAAAAACGC TTTCCGTTAT
CAATTGGCCG TGACCTGGCG TGAAGAAACC TGGGTGATTG AAGATCCTTA CCGCTTTGGC
CCGCTGTTGC AGGATATGGA TATTTGGCTG CTGGCCGAAG GCACCCATCT GCGGCCTTAC
GAGCGGCTGG GTGCCCATCT GGAAACGCTG GACGGGGTTG AAGGTACGCG TTTTGCCGTG
TGGGCACCCA ATGCTCAGCG CGTTTCGGTA GTGGGGCAGT TCAACTTCTG GGATGGTCGC
AGGCACCCGA TGCGGTTGCG TAGGGAGAAT GGCATTTGGG AGCTGTTTCT TCCCGATGTA
AAAGCGGGGC AGCTCTACAA ATATGAAATG ATCGATAGCC ACGGCAGCAT CCGGTTGAAG
GCCGATCCGT ATGCGTTTGA AGCGCAGATG CGCCCGGATA CCGCCTCGCT AATTACGCCG
TTGCCTGAGA AAGTCCCAAC CAGCGATGCC CGGCGTGAGG CGAATGGCCT GCGTTCGCCT
ATCTCCATTT ATGAAGTTCA CCTTGGTTCC TGGCGGCGGC ATACGGATAA CAATTTCTGG
CTGAGCTATC AGGAATTGGC GAAGCAACTG ATTGATTATG TGCAGTACAT GGGTTTCACG
CATGTGGAGC TGATGCCGAT TAACGAACAC CCGTTCGATG GTAGCTGGGG CTATCAACCG
CTGGGGCTCT ATGCGCCAAC GCGCCGTTTC GGCACCGCGC AGGAGTTCAG GGCGTTTGTT
GATGCACTCC ATGATGCGGG CATTAACGTC TTACTGGACT GGGTGCCCGG ACATTTTCCC
GGTGACGAAT ACGGTTTGGC ACAGTTTGAC GGCACCGCGC TGTATGAATA CGCCGATCCG
CGTGAAGGCT ATCATCAGGA CTGGAACACG CTGATTTATA ACTATGGTCG CCATGAGGTG
CGTAACTATC TGGCGGGCAA CGCGCTGTTC TGGATGGAAC GCTATGGCAT CGACGGGCTG
CGGGTAGACG CCGTGGCTTC CATGATTTAC CGCGACTACA GCCGCAGCGA AGGCGAGTGG
GTGCCGAACC ATTACGGCGG TAAAGAGAAC CTTGAGGCGA TTGCGTTTCT GCGCTACACC
AACCACATGC TGGGCCATGC CGCACCGGCG GCGATCACAC TGGCTGAAGA GTCGACCGAT
TATCCGGGCG TCACGCTGCC GCCGGATTGC AACGGGTTAG GGTTTCACTA CAAATGGAAT
ATGGGCTGGA TGCACGACAC GCTGGCCTAT ATGCAGCACG ATCCGGTTCA CCGCAAATAT
CATCACGATT TGCTGACATT CGGCATGTTG TACGCCTACA GCGAGAACTT CGTGCTGCCG
CTGTCTCACG ATGAAGTGGT GCATGGCAAA CGTTCGTTGC TGGATCGCAT GCCCGGCGAT
GTCTGGCAAA AATTTGCCAA TTTACGCGCC TATTACGGTT TTATGTGGGC CTATCCCGGT
AAGAAACTGC TGTTTATGGG GGGCGAATTT GCGCAGGGAC GTGAATGGAA CCATGACGCC
AGTCTGGACT GGCATCTGCT GGATGAACCG GAAGGCTGGC ACCGCGGCGT GCAGACGCTG
GTGCGCGATC TCAACCATTA CTATCGCCAG CAGCCGTCGC TATATCAGTT AGATTTTCAG
CCGCAGGGCT TTGAATGGCT GGTGGTGGAC GATCGGGAAA ATTCGGTTTT TGCCTTTGTC
CGGCGTGATG AGCAGGGCAA CGAAGTGCTG GTGGTCAGCA ACTTTACGCC GGTACCACGT
TATGGCTATC GGATTGGCAT TAACCAGCCC GGCGGCTGGC GAGAAGTCAT CAACACCGAT
TCTGTTCACT ACAACGGTAG CGATTTGGGC AATGTTGGGA CGATTTATAG TGAGGAATGG
GGCAGCCATC AGCGCCAGCA CTCTCTTGTT CTGACTATTC CGCCGCTTGC TACGCTGTAT
CTGGTGAAGG AGGCGTAA
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| Protein sequence | MSAFSDAINS LISGHYADPF SLLGMHHSSE GLEVRALLPD AQAAWVVDAS NGRKIVELER
IDERGFFCGL VPRRKNAFRY QLAVTWREET WVIEDPYRFG PLLQDMDIWL LAEGTHLRPY
ERLGAHLETL DGVEGTRFAV WAPNAQRVSV VGQFNFWDGR RHPMRLRREN GIWELFLPDV
KAGQLYKYEM IDSHGSIRLK ADPYAFEAQM RPDTASLITP LPEKVPTSDA RREANGLRSP
ISIYEVHLGS WRRHTDNNFW LSYQELAKQL IDYVQYMGFT HVELMPINEH PFDGSWGYQP
LGLYAPTRRF GTAQEFRAFV DALHDAGINV LLDWVPGHFP GDEYGLAQFD GTALYEYADP
REGYHQDWNT LIYNYGRHEV RNYLAGNALF WMERYGIDGL RVDAVASMIY RDYSRSEGEW
VPNHYGGKEN LEAIAFLRYT NHMLGHAAPA AITLAEESTD YPGVTLPPDC NGLGFHYKWN
MGWMHDTLAY MQHDPVHRKY HHDLLTFGML YAYSENFVLP LSHDEVVHGK RSLLDRMPGD
VWQKFANLRA YYGFMWAYPG KKLLFMGGEF AQGREWNHDA SLDWHLLDEP EGWHRGVQTL
VRDLNHYYRQ QPSLYQLDFQ PQGFEWLVVD DRENSVFAFV RRDEQGNEVL VVSNFTPVPR
YGYRIGINQP GGWREVINTD SVHYNGSDLG NVGTIYSEEW GSHQRQHSLV LTIPPLATLY
LVKEA
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