Gene PC1_3870 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3870 
SymbolnirD 
ID8134857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4356491 
End bp4356859 
Gene Length369 bp 
Protein Length122 aa 
Translation table11 
GC content51% 
IMG OID644867177 
Productnitrite reductase small subunit 
Protein accessionYP_003019421 
Protein GI253690231 
COG category[P] Inorganic ion transport and metabolism
[R] General function prediction only 
COG ID[COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 
TIGRFAM ID[TIGR02378] nitrite reductase [NAD(P)H], small subunit 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.234974 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCAGT GGACGACCGT ATGTAAGTTA GACGACATTC TGCCCGGCAC CGGCGTTTGC 
GCGCTCGTCG AACAGCAGCA GATCGCCGTG TTCCGGCCGC GTAACGACGA GCAGGTTTAC 
GCCATCAGCA ATATCGATCC GTTTGCGCAG GCTAGCGTAT TAAGCCGTGG CATACTGGCC 
GAACATCATG AGGAGCTTTG GGTAGCAAGC CCATTGAAAA AACAGCATTT TCGCCTTTAT 
GATGGTTTTT GCCTGGAGGA TGGAGCCTAT TCTGTTGCAG CTTACGATAC TCAGGTAACC 
AACGGTAATG TGCAAATATC CATCGCAGAC CGTGACATTG CGGTTGATAA TAGCCAACCA 
TTACCTTAA
 
Protein sequence
MSQWTTVCKL DDILPGTGVC ALVEQQQIAV FRPRNDEQVY AISNIDPFAQ ASVLSRGILA 
EHHEELWVAS PLKKQHFRLY DGFCLEDGAY SVAAYDTQVT NGNVQISIAD RDIAVDNSQP 
LP