Gene PC1_3858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3858 
Symbol 
ID8134845 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp4339465 
End bp4340589 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content50% 
IMG OID644867165 
ProductPectate lyase/Amb allergen 
Protein accessionYP_003019409 
Protein GI253690219 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3866] Pectate lyase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATACC TACTGCCTTC TGCAGCTGCA GGACTGTTGC TGCTCGCAGC CCAACCAACA 
ATGGCGGCAA ATACGGGGGG TTATGCCACC ACTGACGGCG GCGACGTTTC CGGTGCAGTG 
AAAAAAACCG CACGTTCTTT GCAAGAGATC GTCGATATCA TTGAGGCAGC GAAAAAGGAC 
TCAAGCGGTA AAGCGGTAAA AGGCGGCGCC TACCCACTCG TCATCACCTA TAACGGTAAT 
GAAGATGCGT TAATCAAAGC GGCTGAAGCT AACATCTGCG GCCAATGGAG CAAAGATCCG 
CGTGGCGTAG AAGTCAAAGA GTTCACCAAA GGGATCACCA TCCTCGGGAC CAACGGTTCT 
TCCGCTAACT TTGGTATCTG GATTGTAAAC TCTTCCAACG TTGTCGTACG TAACATGCGC 
TTCGGCTATA TGCCTGGCGG CGCAAAAGAT GGTGATGCTA TCCGTATTGA TAACTCGCCG 
AACGTCTGGA TCGACCACAA CGAGATTTTC GCCAAGAACT TCGAATGTGC AGGTACACCA 
GACAACGACA CGACCTTTGA ATCGGCTGTC GATATCAAGA AAGCCTCAAC CAACGTCACG 
GTATCCTACA ACTATATCCA TGGCGTGAAA AAGGTGGGTC TGAGCGGTTC CAGCAACACG 
GATACGGGTC GTAACCTGAC TTACCATCAC AATATTTACA GCGATGTTAA CTCACGTCTG 
CCGCTGCAAC GTGGTGGCCA GGTGCACGCA TACAACAACC TGTATGACGG CATCAAAAGT 
TCAGGCTTTA ACGTTCGCCA GAAAGGGATT GCTCTGATCG AAAGCAACTG GTTCGAAAAT 
GCGCTCAACC CTGTAACTGC ACGTAACGAT GACTCCAACT TCGGTACCTG GGAATTGCGT 
AACAACAACA TTACCAGCCC GTCTGATTTT GCTAAATACA ACATCACCTG GGGTAAGCCA 
TCCACACCAC ACATCAATGC GGATGATTGG AAAAGCACTG GCAAATTCCC TGCCGTCCCG 
TATAGCTACA CCCCGGTTTC CGCACAGTGC GTGAAGGATA AACTGGCAAA CTATGCTGGC 
GTAGGTAAAA ACCTGGCAGT CCTGACAGCA GCTAACTGTA AATAA
 
Protein sequence
MKYLLPSAAA GLLLLAAQPT MAANTGGYAT TDGGDVSGAV KKTARSLQEI VDIIEAAKKD 
SSGKAVKGGA YPLVITYNGN EDALIKAAEA NICGQWSKDP RGVEVKEFTK GITILGTNGS 
SANFGIWIVN SSNVVVRNMR FGYMPGGAKD GDAIRIDNSP NVWIDHNEIF AKNFECAGTP 
DNDTTFESAV DIKKASTNVT VSYNYIHGVK KVGLSGSSNT DTGRNLTYHH NIYSDVNSRL 
PLQRGGQVHA YNNLYDGIKS SGFNVRQKGI ALIESNWFEN ALNPVTARND DSNFGTWELR 
NNNITSPSDF AKYNITWGKP STPHINADDW KSTGKFPAVP YSYTPVSAQC VKDKLANYAG 
VGKNLAVLTA ANCK