| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3798 |
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| Symbol | rpsD |
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| ID | 8134785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4296115 |
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| End bp | 4296735 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644867105 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_003019349 |
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| Protein GI | 253690159 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.108792 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ATTTGGGTCC TAAGCTCAAG CTGAGCCGTC GTGAAGGCAC CGACCTGTTC
CTGAAGTCTG GTGTTCGTGC GATCGATTCC AAGTGTAAAA TTGAACAAGC TCCTGGCCAG
CACGGTGCGC GTAAACCGCG TCTGTCTGAC TATGGTGTAC AGTTGCGTGA AAAGCAAAAA
GTTCGCCGTA TCTACGGTGT TCTGGAGCGT CAGTTCCGTA ACTATTATAA AGAAGCTGCA
CGTCTGAAAG GCAACACAGG TGCAAACCTG CTGCAACTGC TGGAAGGTCG TCTGGATAAC
GTAGTTTATC GTATGGGTTT TGGTGCCACT CGTGCTGAAG CACGTCAGAT GGTAAGCCAC
AAAGCTATCA TGGTAAACGG TCGCGTTGTT AGCATCGCTT CTTATCAGGT ATCCCCGAAT
GACGTAGTCA GCATCCGTGA GAAAGCGAAA AAGCAATCTC GCGTGAAAGC CGCTCTGGAG
CTGGCTGAAC AGCGTGAAAA GCCAACTTGG CTGGAAGTTG ATGCTGCCAA GATGGAAGGT
GTGTTCAAAC GTATTCCTGA ACGTACCGAT CTGTCTGCGG ACATTAATGA ACACCTGATC
GTCGAGCTTT ACTCCAAGTA A
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKIEQAPGQ HGARKPRLSD YGVQLREKQK
VRRIYGVLER QFRNYYKEAA RLKGNTGANL LQLLEGRLDN VVYRMGFGAT RAEARQMVSH
KAIMVNGRVV SIASYQVSPN DVVSIREKAK KQSRVKAALE LAEQREKPTW LEVDAAKMEG
VFKRIPERTD LSADINEHLI VELYSK
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