| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3620 |
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| Symbol | thiP |
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| ID | 8134600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 4082901 |
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| End bp | 4084508 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866920 |
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| Product | thiamine transporter membrane protein |
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| Protein accession | YP_003019171 |
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| Protein GI | 253689981 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
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| TIGRFAM ID | [TIGR01253] thiamine ABC transporter, permease protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.393942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACGC GCCGTCAGCC ACTAATCGGC GGACGTCTGT GGCCGGGGCT ACTGGCCACA
ACGCTGTTAA TTTCCGTTGC CGCACTGGCT TTCGGTGCAC TCTGGTTACA GGCACCCGAC
AGCCAGTGGC GCACGCTATG GCATGACAGC TATCTCTGGC ATGTTATTCG GTTCACCTTC
TGGCAAGCCT TTCTCTCTGC GCTGTTTTCT ACCGTTCCGG CCATTTTTCT CGCCAGAGCG
CTGTATCGAC GGCGTTTTCC CGGCCACCGT TGGCTACTGC GCCTGTGCGC GATGACGCTG
GTGCTGCCCG TGCTGGTTGC CGTTTTTGGC CTGCTCAGCG TGTATGGACG TCAGGGCTGG
CTAGCCTCTG CACTGAGCGG GTTTGGCTTA AAATACACGT TTTCACCCTA TGGATTGCAG
GGCATCCTGC TGGCGCATGT GTTCTTCAAT CTGCCGCTGG CAACCCGATT GCTGTTGCAG
TCGCTGGAGG GGATTGCTAC CGAGCAACGC CAACTGGCTG CAAATCTGGG CATGAACAGC
TGGCAACATT TCCGCCTGCT GGAATGGCCC GCCCTGCGCC GACAAATTTT ACCGACCGGC
GCACTGATTT TTATGCTCTG CTTTGCCAGC TTTGCGACGG TGCTGTCGCT GGGCGGCGGC
CCGCAGGCGA CCACGATTGA GCTGGCTATC TATCAGGCAT TAAGCTTTGA TTACGATCCG
GGTCGCGCGG CGCTGCTGGC GTTAATTCAG ATGGTTTGCT GTCTCGGTTT GGTGCTGCTA
AGTCAGCGGC TGGGGCGCAT TCTGCCCGTC GGCAGCACAC AGCAGCTCAC TTGGCGCAAC
CCGCAGGATA GCGCTTTAAG CCGTCTCACC GATGGCCTGC TGATTGGCGC GCTGTTGCTG
CTGGTCGTTC CTCCCTTGCT GGCCGTGGTG GTTGATGGCG TGAACCGCTC GCTGGTTACC
GTGCTGCAAC AGCCCGTGCT CTGGCAAACG CTATTTACCT CGCTGCGTAT CGCTCTGGGC
GCAGGGCTCC TGTGTCTGGT GTTGACCATG ATGTTGCTTT GGAGCAGCCG CGAACTCAAG
TTACGCCAGA AGCCACTCTA CGGGCAGTTG ATGAATCTGA GCGGGATGCT CATCCTCGCC
ATGCCCGGTA TTGTGCTGGC AACCGGCTTT TTCCTGCTGC TGAATAACAG CATTGGCTTG
CCGCAATCCC CCTACGCGCT GGTGGTGTTC ACCAACGCAC TGATGGCAAT TCCGTATGCG
ATCAAAGTGC TGGAGAACCC GATGCTGGAC GTTGCAGAGC GCTACAACCG ACTCTGCGCA
TCACTGGATA TTCGCGGCTG GCAGCGGCTG AAGCTGATCG AGCTGGCTGC ACTGAAGCAG
CCGTTAGCAC AAGCATTAGC CTTTGCCTGC GTGCTGTCGC TCGGTGATTT CGGCGTCATC
GCGCTGTTTG GCAATGAGCA ATTCCGCACG CTGCCGTTCT ATCTGTACCA GCAAATTGGT
TCCTATCGCA GCGCCGATGG TGCAGTCACA GCACTGCTGT TGATGCTGCT GTGCTTTATG
TTATTTACCC TGATTGAGAA ACTGGCAGGC CGTCATGATC GCGCTTGA
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| Protein sequence | MATRRQPLIG GRLWPGLLAT TLLISVAALA FGALWLQAPD SQWRTLWHDS YLWHVIRFTF
WQAFLSALFS TVPAIFLARA LYRRRFPGHR WLLRLCAMTL VLPVLVAVFG LLSVYGRQGW
LASALSGFGL KYTFSPYGLQ GILLAHVFFN LPLATRLLLQ SLEGIATEQR QLAANLGMNS
WQHFRLLEWP ALRRQILPTG ALIFMLCFAS FATVLSLGGG PQATTIELAI YQALSFDYDP
GRAALLALIQ MVCCLGLVLL SQRLGRILPV GSTQQLTWRN PQDSALSRLT DGLLIGALLL
LVVPPLLAVV VDGVNRSLVT VLQQPVLWQT LFTSLRIALG AGLLCLVLTM MLLWSSRELK
LRQKPLYGQL MNLSGMLILA MPGIVLATGF FLLLNNSIGL PQSPYALVVF TNALMAIPYA
IKVLENPMLD VAERYNRLCA SLDIRGWQRL KLIELAALKQ PLAQALAFAC VLSLGDFGVI
ALFGNEQFRT LPFYLYQQIG SYRSADGAVT ALLLMLLCFM LFTLIEKLAG RHDRA
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