| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3482 |
|---|
| Symbol | |
|---|
| ID | 8134462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3927787 |
|---|
| End bp | 3928779 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644866783 |
|---|
| Product | oxidoreductase domain protein |
|---|
| Protein accession | YP_003019034 |
|---|
| Protein GI | 253689844 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0673] Predicted dehydrogenases and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCG GATTCGTTGG ATTTGGTGCA CAAGCTCGTG AAAATCTTAT ACCCGCGTGT
AATGCATTAT TTGGCGTGGA AATTGCGGCG ATTTGTGATA CCGACCCTGC AAAGTGTCTT
GAAGCGGCGA CCCTGTTTAA ATTTGATGAA GCAAAGATAT TCAGTAATCA TTGTGACATG
ATGGATAAAT GTAAACTCGA TGCCGTTATC GTGGCGTGTT ATCCCTCAGC CCATTATCAG
ATAGCTTATG ATGCGATAGA ACGTGGCATT CCGGTCTTAT TAGAAAAACC CGTAGCGGCC
CGCTCGGAAG ATGTTATTCG CCTTGCTGAA ATGGCGAAGC GAAAAGGCGT GATTACCGGT
TCCGGTATGA ATTTTCGTTT CGCAGATGTA ACAGAACGTA TTAAACAAAT CTATAACGAT
AAAATACAGA TGATCAGTTT ACGGCAAATG GCGAATAAAC CAGTCTCTGT ACTCTGGGAT
TATAACAGCG TGTTGAAATC CTTTCTGCAT GCACAGACTA TTCACGGCCT CGATCTCCTG
ATACATCTCT GTGGCTCGGT CAAGAAATTA TCGGTGGCGG ATAATAGCAG CGACGGAAAT
ATTATATTTA GCGTATTACT GGAGTTCGTT AATGGTGCTC ACGGCACGCT CATTACCAGT
AATACCTCGC CACACTTCAC TTTTGATTTA GACGTATTAG CCGACGATCG GCTTCATATT
AAGAGCACAT CACTGAGTAC GATTAGCGTT GCGGATATGG ACAAAACGTA TCTGAAAGGT
GAGCGCAAAC GCTGGTGCGA TACCTGGGCC GTCAGTCCGC TGTCGTCAGG GTATTCGAGA
GCGGGGTACA CGGGCGAGAT TCTCGATTTT ATTAATGCCA TTCAGGCAGG CGACAGGGAT
TCCAAGACGG CTCTGTCAAC GCTGATTGAA ACCTATCGCT GCATGGATGC TATCGAAGAA
CAGTGCAAAC GCGTGTTAGC GGTTAATTAT TAA
|
|---|
| Protein sequence | MKIGFVGFGA QARENLIPAC NALFGVEIAA ICDTDPAKCL EAATLFKFDE AKIFSNHCDM
MDKCKLDAVI VACYPSAHYQ IAYDAIERGI PVLLEKPVAA RSEDVIRLAE MAKRKGVITG
SGMNFRFADV TERIKQIYND KIQMISLRQM ANKPVSVLWD YNSVLKSFLH AQTIHGLDLL
IHLCGSVKKL SVADNSSDGN IIFSVLLEFV NGAHGTLITS NTSPHFTFDL DVLADDRLHI
KSTSLSTISV ADMDKTYLKG ERKRWCDTWA VSPLSSGYSR AGYTGEILDF INAIQAGDRD
SKTALSTLIE TYRCMDAIEE QCKRVLAVNY
|
|---|
| |