Gene PC1_3439 details

Gene Information

• Locus tag: PC1_3439
• Symbol: prfH
• ID: 8134419
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 3884673
• End bp: 3885296
• Gene Length: 624 bp
• Protein Length: 207 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 644866740
• Product: peptide chain release factor-like protein
• Protein accession: YP_003018991
• Protein GI: 253689801
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1186] Protein chain release factor B
• TIGRFAM ID: [TIGR03072] putative peptide chain release factor H

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.3707
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATATTGC TTCAGCTCTC CGCCGCGCAG GGGCCGGACG AATGCATGCT GGCAACGGCA 
AAAGCGTTGC AGGCTCTGAT ACAGGATGCC GCCCGGCAAG GTATCGAATG TGAGATCATC 
GAAACCGAAG AAGGGAAACG CTCTGGCACA CTGCGTTCCG CACTGGTGCT GTTAAACGGC 
GATCGGACGG AACCGCTGGC TGCCAGCTGG TGCGGTACGC TTCAGTGGAC GTGCAATAGC 
CCGTGGCGTA AAGGGGGTGG ACGTAAGAAC TGGTTTATCG GCGTCGCACG CTTTCATCAG 
GAACAGGCGT TTGCCGATAA CGAGATTCGT TTTGAAGCCA CCAAATCCTC CGGCCCCGGC 
GGACAGCATG TGAATAAAAC CGAGTCTGCC GTCCGCGCTA CCCATGTCGC CAGCGGCATC 
ACAGTAAAGG TGCAGAGTGA ACGCAGTCAG CACGCGAACA AGCGTCTGGC CTGTTACCTC 
ATCGCCTATC GTCTGAAAGC GTTACAGCAA CAGCAGCATG CCGAACTACG GGCACAGCGG 
CGTCTGTTCC ATCACCAGAT CGAACGCGGC AATCCGGTAA AAGTCTTCAA AGGCGAAGAT 
TTCACGCTGG TCACATCGCG CTGA 

 

Protein sequence

MILLQLSAAQ GPDECMLATA KALQALIQDA ARQGIECEII ETEEGKRSGT LRSALVLLNG 
DRTEPLAASW CGTLQWTCNS PWRKGGGRKN WFIGVARFHQ EQAFADNEIR FEATKSSGPG 
GQHVNKTESA VRATHVASGI TVKVQSERSQ HANKRLACYL IAYRLKALQQ QQHAELRAQR 
RLFHHQIERG NPVKVFKGED FTLVTSR