Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_3371 |
Symbol | |
ID | 8134351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3801774 |
End bp | 3803108 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644866672 |
Product | glycoside hydrolase family 28 |
Protein accession | YP_003018923 |
Protein GI | 253689733 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5434] Endopolygalacturonase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAGCACT CTATCCAGTC ATACTCCCCC GCCGCCGACG GCGTCACACC GGATACCGCC ATTTTTCAGC AGGCTATCGA CAGGATTGCG GCACAGGGCG GCGGCACCTT GACGGTAGAA CCGGGGCGCT ATCTGTTAGG GGGCTTGCTG CTGCCTTCCA ATTTTTGCCT GCAACTGGAG GCGGGGGCTG AGCTCATCGT CAGCGGCGAC TATGAGCAGT TTACGCAGGC TACCACCATC AGCATGGCCG AGCTGTCACA TCGGGCGTTT CTTTATGCTT ACCAACAGCG CAATATCACG ATCTGCGGTC AGGGTAAGAT CATGGGAAAT GCCGACGCCT ATTTCTCGGT GGAACCCGAC GCTCAAGGCT ATCGCCTGCC TGCGCAACAT CGCCCACGCA TTGTGGTTTT TGAGGATTGC GAACACATCC GCCTGTGTGA CTTTACGATT GAACACGCGC CAATGTGGAC CGTGCATTTG GTCAGCTGTC GTCACGTCAT CGTCGAACGC CTGACGATTG ATAACGATCT GAGCATGGCG AATACCGATG CGCTGGATCT CGATAGCTGC CAGCAGGTAC AAATCAGCAA CTGCTCGCTG AGCGCCGCCG ACGATGCACT GTGCATCAAA ACCACCAATA AGCCGCCACA TCTGCAACGT AAGGTGCAGC AGGTCGTTAT CAGCAATTGC CTGTTGCGCT CCAAGAGCTG TGCGCTGAAG GTCGGCACCG AAACCTTTGC CGACATTGAA GATATCTCCG TCAGCAACTG TGCCATTTAC GATACCAACC GCGCGATCGG CCTGATCTCC CGCGATGGTG GCACGTTCCG ACGTTTGCAG TTCAGCAACA TCACATTCCA GTGTGTCGCC GCACATCCGT GCCACTGGGG CAAAGCCGAT CCGATCTTTA TCTCCGTACG CTATCGCGAT CCCGCCATCG AACCGGGCCG GATCGAAGCG GTGCAATTTT CGCAGATCGC GGGGATCAGC GAGGGGGCGA TTAACCTGCA CAGCACGCCC GCAGGCTACA TTCGTGACAT CCATTTCCAT GCCGTGCACC TCGAACAGCG GCAGAGCGAC TCGCCGGAAC AGGGCATGTA CGATGTGCGT CCGCCCTGCA ACCCGGAACG CCCTACGGGC ATGGGGTTAG ACAATGCGTA TCGGGTCGAT CCCATTACCG GGCGCGCATT CGGCGTTGAG CACTACCCAG GCGGCATGCC CGCATTATTT GCTCGTGGCG TCCTGAACCT GACCACCAGC CACATGACGA TCCACCGTCC CGATCCGCTC CCTTCAGGCT GGCATCACGC CACGATCGTG CAGTTGGAAG AATAA
|
Protein sequence | MKHSIQSYSP AADGVTPDTA IFQQAIDRIA AQGGGTLTVE PGRYLLGGLL LPSNFCLQLE AGAELIVSGD YEQFTQATTI SMAELSHRAF LYAYQQRNIT ICGQGKIMGN ADAYFSVEPD AQGYRLPAQH RPRIVVFEDC EHIRLCDFTI EHAPMWTVHL VSCRHVIVER LTIDNDLSMA NTDALDLDSC QQVQISNCSL SAADDALCIK TTNKPPHLQR KVQQVVISNC LLRSKSCALK VGTETFADIE DISVSNCAIY DTNRAIGLIS RDGGTFRRLQ FSNITFQCVA AHPCHWGKAD PIFISVRYRD PAIEPGRIEA VQFSQIAGIS EGAINLHSTP AGYIRDIHFH AVHLEQRQSD SPEQGMYDVR PPCNPERPTG MGLDNAYRVD PITGRAFGVE HYPGGMPALF ARGVLNLTTS HMTIHRPDPL PSGWHHATIV QLEE
|
| |