| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3242 |
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| Symbol | |
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| ID | 8134214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3653515 |
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| End bp | 3657012 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644866539 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_003018798 |
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| Protein GI | 253689608 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.748769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAAAA CAATCATAAC CTTTCTACGC AAGCAGTTGC CTAAACTGAA ACCCTCCTGG
CTACTTTTGG GCGTGCTACT GTGGATCGTC GTGCTGGTTC TGGCCTGGTG GCTGGGACCG
CGTTTGGTGG TGGGCGAATC ACGCCCGTTA CAGGGAATCT GGGGCCGCGT GGTGTTCACG
CTGGTCTGGC TGTGGCTGGC GTTCTCCTAT AGTGCCTGGA TGGTCTGGCG TCGTGTGCAG
CAGATGCGTG CAGAGCGTCA TGAACAACAG GTAATTGAGC AGGATCCCCT GCAGGTGTAT
GTCGATAGCC AGCAGACGTT TCTCGATCGC TGGCTGGAGG CGTTTCAGAC CCAACTGGGT
AAACGCGCAC TGTATGCGAT GCCCTGGTAT CTGACGATTG GTCTGGCTGG CAGCGGGAAA
AGCAGCCTGA TCCATCGTGC CAACCCGGCA AACAAAATGA ACCCGAAGCT GGATGCGGAA
CTGCGAGACG TGGCGGCAGG CCAGCAGGTG AGCAGTTGGG TCGGTGAGTC TGCCGTTATC
TGGGACCCCA GCGGACAGCT ACTCGCGCAG CCTGAACTGG AAGGCGATTC ACTCGGACAG
CGTTATGCTC GACTGTGGCA GCACCTGCTC CAGTGGTTGA GTGAAAACCG CCGCCGCCAG
CCGCTTAATG GTCTGGTGCT CACGCTGGAT ATTTCCTGGC TGGCACAGGC TGGCGTCGCG
GATCGCAAAG CTTATGCGCA GGTCATGCGC GCGCGTTTGC AGGAAATTTC CGTCAACATC
AATACGCGTT TACCGGTGTA TATCGCGCTG ACCCGGCTGG ATATGCTGAG CGGCTTCGAT
AAGGTCTATC GCCAGTTAAA CCGCGACGCG CGTCAGGCAG TATTAGGGGT GACCTTTACC
CCGCAGGCGA GCAATGGCAA AGGTTGGCTA GAAGAGCTGG AGCGTTTCTG GGATGAGTGG
GTCACGCACC TGAATGACAA CCTGCCAGAC ATGCTGCTGA CGCAGTCCGA CAGAAGCGTG
CGCAATTCGC TGTTCTCGTT CGTCCGCCAA CTCGCTGGCG TGAAAGATTA TGTGATGGAA
GTGCTGACGG AAACGTTAGC GACGGGCGAG GATCGCGCGT TTCTGATCCG CGGTGTCTAT
GTGAGTTCTG TCTATCAGCA AGGGGTACCG TTCGACGCCT TTGCGCAGTC GGCTTCCCGA
CGCTATCAAC TGCCTGAACC GATTAATCCT GCGCTGCGCG GGGAATCCAA TACGTTCTTT
GTGCAGCGTC TTTTCCCTGA CGTCATCTTC CCTGAAGCCA GTCTGGCAGG TGAAAACCGG
CTGCATAGCC TCTATCGTCG GCGTCGACTG AGCATCGGCG TAGGTTGCAT GCTGCTTGCC
AGTCTGGTGC TGATTGGCAG TTGGCACCAT TTCTATCGGG TCAATGAAGA GGCCGGACGT
AACGTACTGA CGAAAGCGCA GGCGTTTATC GGCACCAATG AACTGGAAGG GCAGCCGGGC
TACGGTTATC AGCAGTTGCC GCGGTTGAAT TTGATTCGCG ATGCGACCTT ATCTTTTGGT
AATTACCACG AACGTACGCC GATGCTGGCC GACCTTGGCC TGTATCAGGG CGGTAAGATT
GGGCCTTATG TTGAAGGCAC TTACCTGCAA ATGCTGAACC AGCGCTTTCT TCCGGCAGTG
ATGCAAGGGC TGCTGGAGGA TTTGAATCAG GCGCCTGCCA ATAGTGAGCA AAAGCTGACG
ATTCTGCGCG TGATGCGGAT GCTGGATGAT GCGTCAGGGC GTAATAAATC GCTGGTCGAA
CAGTTTATGG CGCAGCGTTG GCAGAAGGCA TTTCCCGGTC AGGGCAATGT ACAGGAACAG
CTGATGCAGC ATCTGGATTA TGCCCTTGAG CACACGGATT GGCACAAGGC GCGTGAGCAG
AAAGATGCGG TAGCCATCAG CACGTTTGCT CCCTTTAATC AGCCGATTAC GCTGGCCCAG
CAGGAACTGA GCAAGCTGCC GATGTATCAG CGCGTTTATC AGAGCCTGGT CATGAAGGCG
ACACAGGTGT TGCCGCCGGA TTTAGCGATC CGTGATGAGG TTGGGCCGAC CTTTGACCCG
GTGTTTTCCC TGCGTAATGA CAAAGCGGGA AGTGTGCCGC GACTGCTGAC GTACCCCGGC
TTTAGTGATT ATTACCTCAA GCAGGACAAA GCCCTGTTAG AGCTGACGGC GCTGGATGCC
TGGGTACTGG GGCAGCGTGA GCGTGCGCAG TTCAGCGAGG CCGATCGGCG TGAAATTCTG
CGTCAGGTTA ACGATCGCTA CATTACGGAT TACATCAACC AGTGGCAGAA AGTGCTGGCG
AACATTGATG TGCAGACGCT CGATACGCCG GAGCAGGCGC TCGATATTCT CACGGATATT
ACCGGCAACG ATCAGCCTTT CCAGCGCGTG CTGACGACGG TTAGTGATAA CACCCGCATT
CGTAAGCTGG CCGATGATGA CAACGACACG GCGCAGAACA TCAATACGCG GATTGGTCGT
CCGTTTATGA CCATCAACGC GGCGCTGAGC GGACGTGGTG AGCAAGGGCC GCTGGTGCAA
GAGGTCAATC AGAAGCTGAC CGATCTCTAT CACTATCTCG ATCAGATCGT TAACGCGACC
GATCCTGGGC AGGCGGCGTT GAAAGCGGTG CAGGCGCGGC AGGGAAATAA ATTTGCCGAT
CCGGTATTCG CTTTACAGCA ATACGCCCGC AGCCTTCCCG CACCGCTGGA TCGCTGGGTC
GGACAGCTCG CCGGAGAGAG CGCGAGTTTG GTGACCGGAC TGGCAATGTC GTCACTGAAT
CAGGAATGGC TGGATAAAGT CGTGACGCCA TTCAATGAGA AGCTGGCGGA TCGCTATCCC
TTCGACCCGT CATCGAACAA GGATGTGCCG CTGTCGGAAA TGGAAATGTT CTTCATGGCT
GGCGGGACGC TGGACAGCTT CTATCAAACC AACCTCAAGG CGATGATGGA AAGCGGCATG
CTGGAAGAAG GCATGGCGTC GCCGTTGCAG GCTGAACTGG TGAAACAGCT TGAACGCGCC
ACTCGCATCC GCCAGACCCT GTTTAATGCG CAGGGCAGTC TGGAAGTGCA TTTCGTGCTG
GAGCCGCTGG AACTGACGGC GAACAAGCGC CGCAGCGTAC TCAATTTGGA TGGACAACTG
CTGGAATACA GCCACGGTCG TCGCCAGAAA ACGCCGTTGG TATGGCCAAA CAGTATGCGT
GACGGGGCTG AAAGCAAGCT GACACTGGTG CCGGACGATC GTGAGCGTTC ACCGCGCAGC
CTGAGCTTTA GCGGGCCGTG GGCGATGTTC CGGTTAATCA ATAGCGATCA ACTGACTCAG
GTTAATGAGA ACACCTTTGA CGTGCGTTTC TCGCTGGAGA ACGGTGCGAT GACGTATCGC
GTGTATACCG ATGCCAGCCA TAACCCGTTT GCCGGTGGTC TGTTCAGCCA GTTCACGCTG
CCTGACTCTC TTTATTAA
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| Protein sequence | MFKTIITFLR KQLPKLKPSW LLLGVLLWIV VLVLAWWLGP RLVVGESRPL QGIWGRVVFT
LVWLWLAFSY SAWMVWRRVQ QMRAERHEQQ VIEQDPLQVY VDSQQTFLDR WLEAFQTQLG
KRALYAMPWY LTIGLAGSGK SSLIHRANPA NKMNPKLDAE LRDVAAGQQV SSWVGESAVI
WDPSGQLLAQ PELEGDSLGQ RYARLWQHLL QWLSENRRRQ PLNGLVLTLD ISWLAQAGVA
DRKAYAQVMR ARLQEISVNI NTRLPVYIAL TRLDMLSGFD KVYRQLNRDA RQAVLGVTFT
PQASNGKGWL EELERFWDEW VTHLNDNLPD MLLTQSDRSV RNSLFSFVRQ LAGVKDYVME
VLTETLATGE DRAFLIRGVY VSSVYQQGVP FDAFAQSASR RYQLPEPINP ALRGESNTFF
VQRLFPDVIF PEASLAGENR LHSLYRRRRL SIGVGCMLLA SLVLIGSWHH FYRVNEEAGR
NVLTKAQAFI GTNELEGQPG YGYQQLPRLN LIRDATLSFG NYHERTPMLA DLGLYQGGKI
GPYVEGTYLQ MLNQRFLPAV MQGLLEDLNQ APANSEQKLT ILRVMRMLDD ASGRNKSLVE
QFMAQRWQKA FPGQGNVQEQ LMQHLDYALE HTDWHKAREQ KDAVAISTFA PFNQPITLAQ
QELSKLPMYQ RVYQSLVMKA TQVLPPDLAI RDEVGPTFDP VFSLRNDKAG SVPRLLTYPG
FSDYYLKQDK ALLELTALDA WVLGQRERAQ FSEADRREIL RQVNDRYITD YINQWQKVLA
NIDVQTLDTP EQALDILTDI TGNDQPFQRV LTTVSDNTRI RKLADDDNDT AQNINTRIGR
PFMTINAALS GRGEQGPLVQ EVNQKLTDLY HYLDQIVNAT DPGQAALKAV QARQGNKFAD
PVFALQQYAR SLPAPLDRWV GQLAGESASL VTGLAMSSLN QEWLDKVVTP FNEKLADRYP
FDPSSNKDVP LSEMEMFFMA GGTLDSFYQT NLKAMMESGM LEEGMASPLQ AELVKQLERA
TRIRQTLFNA QGSLEVHFVL EPLELTANKR RSVLNLDGQL LEYSHGRRQK TPLVWPNSMR
DGAESKLTLV PDDRERSPRS LSFSGPWAMF RLINSDQLTQ VNENTFDVRF SLENGAMTYR
VYTDASHNPF AGGLFSQFTL PDSLY
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