| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3225 |
|---|
| Symbol | |
|---|
| ID | 8134197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3633784 |
|---|
| End bp | 3634749 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644866525 |
|---|
| Product | Pyoverdine biosynthesis protein |
|---|
| Protein accession | YP_003018784 |
|---|
| Protein GI | 253689594 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3207] Pyoverdine/dityrosine biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGATATAA TAAATAATGA ATTAGTTTCA TCGCTAATAT TAAGTGAGTT AATTCAATAT
CGACGCAGAT TTACCCATTC GACGAAACCG ATTAGTGAAG AAGAGTCTCA GGTGACTCAG
GTTCAATTAC CCAGAATCCG TGCCTTTATT GAAGAAGGCC GTCGCATTGA ACTTATTCTC
CCGGCATTTC CGGTGAAATC TCCCAGCCCT TATAAGGTGT TAGGGAGAAA ACCAGATATG
GCGGAGCGTT TGTCCCTGAC CTTCCTGAAT TCGTTATGTC AGCGTATTCA GCTGTATTAT
CCGCCGGGTG CACATATTCG TATTTGCTCA GATGGACATG TATTTGGCGA TCTGATTGGG
ACTAGCGACG AAACGATTAA TCTCTATCAG GATGAAATTG AAAGTTTACT TCATGAACTA
GGAGCTGTTC ATCTCAGCGT CTTTAACCTT AAGGACGTAG AGAATATGGC GCCGCTTACT
GCTGATTATG ATTATCTTCG CCAGCGACTG GTTGAGGATT ACGCCGAGTC AGAAGAGGAC
ATTAAAGCGC AGCTCATGCA GAGCGAAGAA GGCTTGCAGC TTTATCGTTC AATAACCCGC
TTTCTCTATG AAGATAGCCT GCGCCCTGAC TATACCGGTT CTAACGCGGC GTTACAGAAG
GATGCTAAAA AGCGCGCGTG TGGCGTTATT CAACGCAGTT GGGCGTGGGG CAACCTGCTT
GCTGAGCAAT TTCCTGACGC GATCCGTTTG TCTATTCACC CTCAGCCTTC GGACAGCCTG
AAGCTGGGCA TTCATATGAT GCCTACCAAG GACGATTGGT TGACGCCCTG GCATGGTGTT
GCCGCCAATG TTAATGGGCA GTTTGTGTTG ATGAAGAATG CTGATGCGCA GCAGTTGGAC
GGTGAGATTG TGGAAATCCG TGGTACGCCC AGCCATTACT TAGTTAAACA GCCTGATATG
GCATAA
|
|---|
| Protein sequence | MDIINNELVS SLILSELIQY RRRFTHSTKP ISEEESQVTQ VQLPRIRAFI EEGRRIELIL
PAFPVKSPSP YKVLGRKPDM AERLSLTFLN SLCQRIQLYY PPGAHIRICS DGHVFGDLIG
TSDETINLYQ DEIESLLHEL GAVHLSVFNL KDVENMAPLT ADYDYLRQRL VEDYAESEED
IKAQLMQSEE GLQLYRSITR FLYEDSLRPD YTGSNAALQK DAKKRACGVI QRSWAWGNLL
AEQFPDAIRL SIHPQPSDSL KLGIHMMPTK DDWLTPWHGV AANVNGQFVL MKNADAQQLD
GEIVEIRGTP SHYLVKQPDM A
|
|---|
| |