17 homologs were found in PanDaTox collection
for query gene PC1_3179 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012917  PC1_3179  putative P2 LysB-like protein  100 
 
 		 148 aa  301  3.0000000000000004e-81  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.172208  n/a   
 
 
-
 
NC_010498  EcSMS35_4332  phage lysis timing protein LysB  44.83 
 
 		 141 aa  87  9e-17  Escherichia coli SMS-3-5  Bacteria  normal  1  hitchhiker  0.00690858 
 
 
-
 
NC_011353  ECH74115_3043  phage lysis timing protein LysB  45.69 
 
 		 141 aa  86.7  1e-16  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  1  hitchhiker  0.0000220172 
 
 
-
 
NC_011080  SNSL254_A4373  phage lysis regulatory protein  51.28 
 
 		 137 aa  78.6  0.00000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.280847  hitchhiker  0.0000000291923 
 
 
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NC_012912  Dd1591_1525  putative phage encoded host lysis, regulatory protein  36.22 
 
 		 146 aa  77  0.00000000000009  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
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NC_009997  Sbal195_2907  hypothetical protein  40.96 
 
 		 156 aa  69.7  0.00000000001  Shewanella baltica OS195  Bacteria  hitchhiker  0.00540344  normal  0.471124 
 
 
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NC_010465  YPK_2335  putative LysB-like protein  45.33 
 
 		 140 aa  68.2  0.00000000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0437972  n/a   
 
 
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NC_011149  SeAg_B2859  putative regulatory protein  32.46 
 
 		 141 aa  60.1  0.00000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  1  n/a   
 
 
-
 
NC_012880  Dd703_2112  putative phage encoded host lysis, regulatory protein  37.11 
 
 		 149 aa  58.5  0.00000003  Dickeya dadantii Ech703  Bacteria  normal  0.0421209  n/a   
 
 
-
 
NC_010468  EcolC_2769  lysis-like protein  34.26 
 
 		 142 aa  58.2  0.00000004  Escherichia coli ATCC 8739  Bacteria  normal  0.0175692  decreased coverage  0.0000189882 
 
 
-
 
NC_011205  SeD_A3041  phage lysis timing protein LysB  36.11 
 
 		 142 aa  57.8  0.00000005  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  1  hitchhiker  0.00072276 
 
 
-
 
CP001509  ECD_00836  putative Regulatory protein  34.26 
 
 		 142 aa  57.4  0.00000007  Escherichia coli BL21(DE3)  Bacteria  normal  1  n/a   
 
 
-
 
NC_012892  B21_00843  hypothetical protein  34.26 
 
 		 142 aa  57.4  0.00000007  Escherichia coli BL21  Bacteria  normal  1  n/a   
 
 
-
 
NC_012560  Avin_37530  Phage P2 LysB-like protein  35.04 
 
 		 140 aa  56.6  0.0000001  Azotobacter vinelandii DJ  Bacteria  normal  0.441019  n/a   
 
 
-
 
NC_009800  EcHS_A0933  putative LysB protein  35.19 
 
 		 142 aa  56.2  0.0000002  Escherichia coli HS  Bacteria  normal  1  n/a   
 
 
-
 
NC_007650  BTH_II1342  protein lysB  40 
 
 		 146 aa  53.9  0.0000008  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_1391  hypothetical protein  27.56 
 
 		 155 aa  49.3  0.00002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.834357  n/a   
 
 
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