Gene PC1_3172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3172 
Symbol 
ID8134139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp3588542 
End bp3589396 
Gene Length855 bp 
Protein Length284 aa 
Translation table11 
GC content56% 
IMG OID644866467 
Productcapsid scaffolding 
Protein accessionYP_003018731 
Protein GI253689541 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAGA AAGTTTCTAA GTGGTTCCGC GTTGGTGTCG AGGGTGACAC CTGCGATGGT 
CGCGTGATTG ACGCGAACGA TATTCAAAAC ATGGCGGAGA CGTTCGATCC GCGTGTTTAT 
GGTTGCCGCA TCAACCTTGA GCACCTGAAA GGCTTACTGC CTGACAGCCC GTTTCGTCGT 
TATGGCGATG TGGTCGAGCT GAAATCAGAG GCGATTGATG ATGATTCAGC CCTAAAGGGC 
AAGCTGGCGC TGTTTGCCAA AATTACTCCG ACTGACGAGC TGATCGCCCT GAATAAGGCC 
TCGCAAAAGG TCTACACCTC CATGGAAATC CAGCCCAACT TTGCCAACAC AGGCAAAGCC 
TATCTGGTCG GTCTGGCGGT CACCGATGAC CCGGCAAGCC TCGGCACAGA AATGCTGGAA 
TTCAGTGCAA AGGCAAAACT CAACCCACTG GCAACCCGTA AATCTTCCCC GGAAAACCTC 
TTTTCTGTCG CCACTGAAGT GACGCTGGAG TTTGAAGACC TGCCGGACGT GGAGCCGACG 
CTGTTAACCC GCGTGAAAGC CCTGTTTGGC CGTAAGCAGT CCAGTGATGA CGCTCGTTTT 
AATGATGTGC ATGAGGCTGT GGCCGAAGTC GCCGGACAGG TACAAACCAA CGCCGACAGC 
GTGGAGCAGC GCTTTACCCA GCTTGAGCAG CGCCAGCAGC AGGACATTGC CACGCTAACG 
CAGAAGCTGA GCGCCAGTGA GCAGCAGTTA AGCGACCTCA AAGCCACGCT GGACGGCACA 
GAGAGCTTGT CGCAAAAGCG CCGCCCCCCG GCAACAGGTG GCGAAGGTGA AGCCACACTG 
CTGACCAACT GCTAA
 
Protein sequence
MAKKVSKWFR VGVEGDTCDG RVIDANDIQN MAETFDPRVY GCRINLEHLK GLLPDSPFRR 
YGDVVELKSE AIDDDSALKG KLALFAKITP TDELIALNKA SQKVYTSMEI QPNFANTGKA 
YLVGLAVTDD PASLGTEMLE FSAKAKLNPL ATRKSSPENL FSVATEVTLE FEDLPDVEPT 
LLTRVKALFG RKQSSDDARF NDVHEAVAEV AGQVQTNADS VEQRFTQLEQ RQQQDIATLT 
QKLSASEQQL SDLKATLDGT ESLSQKRRPP ATGGEGEATL LTNC